The informative error: A framework for the construction of individualized phenotypes.

Individualization directed acyclic graphs individualized medicine measurement error obesity personalized medicine prediction modelling

Journal

Statistical methods in medical research
ISSN: 1477-0334
Titre abrégé: Stat Methods Med Res
Pays: England
ID NLM: 9212457

Informations de publication

Date de publication:
05 2019
Historique:
pubmed: 23 2 2018
medline: 25 7 2020
entrez: 23 2 2018
Statut: ppublish

Résumé

For the goal of individualized medicine, it is critical to have clinical phenotypes at hand which represent the individual pathophysiology. However, for most of the utilized phenotypes, two individuals with the same phenotype assignment may differ strongly in their underlying biological traits. In this paper, we propose a definition for individualization and a corresponding statistical operationalization, delivering thereby a statistical framework in which the usefulness of a variable in the meaningful differentiation of individuals with the same phenotype can be assessed. Based on this framework, we develop a statistical workflow to derive individualized phenotypes, demonstrating that under specific statistical constraints the prediction error of prediction scores contains information about hidden biological traits not represented in the modeled phenotype of interest, allowing thereby internal differentiation of individuals with the same assigned phenotypic manifestation. We applied our procedure to data of the population-based Study of Health in Pomerania to construct a refined definition of obesity, demonstrating the utility of the definition in prospective survival analyses. Summarizing, we propose a framework for the individualization of phenotypes aiding personalized medicine by shifting the focus in the assessment of prediction models from the model fit to the informational content of the prediction error.

Identifiants

pubmed: 29468943
doi: 10.1177/0962280218759138
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1427-1438

Auteurs

Johannes Hertel (J)

1 Department of Psychiatry and Psychotherapy, University Medicine Greifswald, Germany.
2 German Center for Neurodegenerative Diseases (DZNE), Site Rostock/Greifswald, Germany.

Stefan Frenzel (S)

1 Department of Psychiatry and Psychotherapy, University Medicine Greifswald, Germany.

Johanna König (J)

1 Department of Psychiatry and Psychotherapy, University Medicine Greifswald, Germany.

Katharina Wittfeld (K)

2 German Center for Neurodegenerative Diseases (DZNE), Site Rostock/Greifswald, Germany.

Georg Fuellen (G)

3 Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany.

Birte Holtfreter (B)

4 Unit of Periodontology, Department of Restorative Dentistry, Periodontology, Endodontology, and Preventive and Pediatric Dentistry, Dental School, University Medicine Greifswald, Germany.

Maik Pietzner (M)

5 Institute of Clinical Chemistry and Laboratory Medicine, University Medicine Greifswald, Germany.
6 DZHK (German Center for Cardiovascular Research), partner site Greifswald, Germany.

Nele Friedrich (N)

5 Institute of Clinical Chemistry and Laboratory Medicine, University Medicine Greifswald, Germany.
6 DZHK (German Center for Cardiovascular Research), partner site Greifswald, Germany.
7 Research Centre for Prevention and Health, Glostrup University Hospital, Denmark.

Matthias Nauck (M)

5 Institute of Clinical Chemistry and Laboratory Medicine, University Medicine Greifswald, Germany.
6 DZHK (German Center for Cardiovascular Research), partner site Greifswald, Germany.

Henry Völzke (H)

6 DZHK (German Center for Cardiovascular Research), partner site Greifswald, Germany.
8 Institute for Community Medicine, University Medicine Greifswald, Greifswald, Germany.

Thomas Kocher (T)

4 Unit of Periodontology, Department of Restorative Dentistry, Periodontology, Endodontology, and Preventive and Pediatric Dentistry, Dental School, University Medicine Greifswald, Germany.

Hans J Grabe (HJ)

1 Department of Psychiatry and Psychotherapy, University Medicine Greifswald, Germany.
2 German Center for Neurodegenerative Diseases (DZNE), Site Rostock/Greifswald, Germany.

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