New Features for Neuron Classification.
Neuron classification
Neuron features
Reconstructed neuron tree
Journal
Neuroinformatics
ISSN: 1559-0089
Titre abrégé: Neuroinformatics
Pays: United States
ID NLM: 101142069
Informations de publication
Date de publication:
01 2019
01 2019
Historique:
pubmed:
1
5
2018
medline:
23
8
2019
entrez:
30
4
2018
Statut:
ppublish
Résumé
This paper addresses the problem of obtaining new neuron features capable of improving results of neuron classification. Most studies on neuron classification using morphological features have been based on Euclidean geometry. Here three one-dimensional (1D) time series are derived from the three-dimensional (3D) structure of neuron instead, and afterwards a spatial time series is finally constructed from which the features are calculated. Digitally reconstructed neurons were separated into control and pathological sets, which are related to three categories of alterations caused by epilepsy, Alzheimer's disease (long and local projections), and ischemia. These neuron sets were then subjected to supervised classification and the results were compared considering three sets of features: morphological, features obtained from the time series and a combination of both. The best results were obtained using features from the time series, which outperformed the classification using only morphological features, showing higher correct classification rates with differences of 5.15, 3.75, 5.33% for epilepsy and Alzheimer's disease (long and local projections) respectively. The morphological features were better for the ischemia set with a difference of 3.05%. Features like variance, Spearman auto-correlation, partial auto-correlation, mutual information, local minima and maxima, all related to the time series, exhibited the best performance. Also we compared different evaluators, among which ReliefF was the best ranked.
Identifiants
pubmed: 29705977
doi: 10.1007/s12021-018-9374-0
pii: 10.1007/s12021-018-9374-0
doi:
Types de publication
Journal Article
Langues
eng
Pagination
5-25Références
Methods. 2001 Aug;24(4):309-21
pubmed: 11465996
Circulation. 1996 Mar 1;93(5):1043-65
pubmed: 8598068
Bioinformatics. 2010 Feb 1;26(3):440-3
pubmed: 19880370
Biomed Eng Online. 2014 Jul 05;13:94
pubmed: 24998888
Trends Neurosci. 2015 May;38(5):307-18
pubmed: 25765323
Cereb Cortex. 2009 Oct;19(10):2248-68
pubmed: 19150923
Ann Neurol. 2011 Sep;70(3):493-507
pubmed: 21796666
J Neurosci. 2006 Mar 15;26(11):3045-55
pubmed: 16540583
Neuroinformatics. 2016 Jan;14(1):41-50
pubmed: 26306866
Folia Neuropathol. 2014;52(2):197-204
pubmed: 25118905
Neuroscientist. 2013 Dec 20;20(4):403-417
pubmed: 24362815
J Nucl Med. 1991 Mar;32(3):534-46
pubmed: 2005466
Phys Rev Lett. 2011 Jul 8;107(2):028101
pubmed: 21797643
Sci Transl Med. 2013 Jan 16;5(168):168ra7
pubmed: 23325800
J Neurosci. 2007 Aug 29;27(35):9247-51
pubmed: 17728438
Neuroscience. 2002;114(2):349-59
pubmed: 12204204
Nat Protoc. 2008;3(5):866-76
pubmed: 18451794
Neuroscientist. 2015 Feb;21(1):30-43
pubmed: 24362814
Dev Neurobiol. 2011 Jan 1;71(1):71-82
pubmed: 21154911
Front Neurosci. 2012 Apr 23;6:49
pubmed: 22536169
Behav Brain Res. 2014 Apr 15;263:51-9
pubmed: 24406724
J Neurosci Methods. 2009 Mar 30;178(1):197-204
pubmed: 19059434
Dev Med Child Neurol. 2010 Mar;52(3):305-7
pubmed: 19747203
Cereb Cortex. 2013 Jun;23(6):1484-94
pubmed: 22628459
Cereb Cortex. 2003 Sep;13(9):950-61
pubmed: 12902394
Micron. 1994;25(1):101-13
pubmed: 8069610
Neuroinformatics. 2011 Mar;9(1):91-6
pubmed: 21222051
Cereb Cortex. 2013 Oct;23(10):2429-36
pubmed: 22875862
J Anat. 1953 Oct;87(4):387-406
pubmed: 13117757