Assessment of the generalization of learned image reconstruction and the potential for transfer learning.


Journal

Magnetic resonance in medicine
ISSN: 1522-2594
Titre abrégé: Magn Reson Med
Pays: United States
ID NLM: 8505245

Informations de publication

Date de publication:
01 2019
Historique:
received: 12 12 2017
revised: 20 04 2018
accepted: 20 04 2018
pubmed: 19 5 2018
medline: 31 12 2019
entrez: 19 5 2018
Statut: ppublish

Résumé

Although deep learning has shown great promise for MR image reconstruction, an open question regarding the success of this approach is the robustness in the case of deviations between training and test data. The goal of this study is to assess the influence of image contrast, SNR, and image content on the generalization of learned image reconstruction, and to demonstrate the potential for transfer learning. Reconstructions were trained from undersampled data using data sets with varying SNR, sampling pattern, image contrast, and synthetic data generated from a public image database. The performance of the trained reconstructions was evaluated on 10 in vivo patient knee MRI acquisitions from 2 different pulse sequences that were not used during training. Transfer learning was evaluated by fine-tuning baseline trainings from synthetic data with a small subset of in vivo MR training data. Deviations in SNR between training and testing led to substantial decreases in reconstruction image quality, whereas image contrast was less relevant. Trainings from heterogeneous training data generalized well toward the test data with a range of acquisition parameters. Trainings from synthetic, non-MR image data showed residual aliasing artifacts, which could be removed by transfer learning-inspired fine-tuning. This study presents insights into the generalization ability of learned image reconstruction with respect to deviations in the acquisition settings between training and testing. It also provides an outlook for the potential of transfer learning to fine-tune trainings to a particular target application using only a small number of training cases.

Identifiants

pubmed: 29774597
doi: 10.1002/mrm.27355
pmc: PMC6240410
mid: NIHMS962219
doi:

Substances chimiques

Contrast Media 0
Protons 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

116-128

Subventions

Organisme : NIBIB NIH HHS
ID : R01 EB024532
Pays : United States
Organisme : European Research Council (Horizon 2020 program)
Pays : International
Organisme : NIH HHS
ID : NIH P41 EB017183
Pays : United States
Organisme : ERC starting grant "HOMOVIS,"
ID : 640156
Pays : International
Organisme : Austrian Science Fund (START project BIVISION Y729)
Pays : International
Organisme : NIBIB NIH HHS
ID : P41 EB017183
Pays : United States

Informations de copyright

© 2018 International Society for Magnetic Resonance in Medicine.

Références

Magn Reson Med. 2018 Jun;79(6):3055-3071
pubmed: 29115689
Med Phys. 2017 Dec;44(12):6209-6224
pubmed: 28944971
Magn Reson Med. 2007 Dec;58(6):1182-95
pubmed: 17969013
Nature. 2015 May 28;521(7553):436-44
pubmed: 26017442
Magn Reson Med. 2014 Mar;71(3):990-1001
pubmed: 23649942
Proc IEEE Int Symp Biomed Imaging. 2016 Apr;2016:514-517
pubmed: 31709031
IEEE Trans Image Process. 2004 Apr;13(4):600-12
pubmed: 15376593
Magn Reson Med. 2001 Oct;46(4):638-51
pubmed: 11590639

Auteurs

Florian Knoll (F)

Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York.
Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York.

Kerstin Hammernik (K)

Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York.
Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York.
Institute of Computer Graphics and Vision, Graz University of Technology, Graz, Austria.

Erich Kobler (E)

Institute of Computer Graphics and Vision, Graz University of Technology, Graz, Austria.

Thomas Pock (T)

Institute of Computer Graphics and Vision, Graz University of Technology, Graz, Austria.
Center for Vision, Automation & Control, AIT Austrian Institute of Technology GmbH, Vienna, Austria.

Michael P Recht (MP)

Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York.
Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York.

Daniel K Sodickson (DK)

Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York.
Center for Advanced Imaging Innovation and Research (CAI2R), New York University School of Medicine, New York, New York.

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Classifications MeSH