Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.
Journal
IEEE transactions on visualization and computer graphics
ISSN: 1941-0506
Titre abrégé: IEEE Trans Vis Comput Graph
Pays: United States
ID NLM: 9891704
Informations de publication
Date de publication:
03 2019
03 2019
Historique:
pubmed:
12
7
2018
medline:
7
1
2020
entrez:
12
7
2018
Statut:
ppublish
Résumé
The majority of diseases that are a significant challenge for public and individual heath are caused by a combination of hereditary and environmental factors. In this paper we introduce Lineage, a novel visual analysis tool designed to support domain experts who study such multifactorial diseases in the context of genealogies. Incorporating familial relationships between cases with other data can provide insights into shared genomic variants and shared environmental exposures that may be implicated in such diseases. We introduce a data and task abstraction, and argue that the problem of analyzing such diseases based on genealogical, clinical, and genetic data can be mapped to a multivariate graph visualization problem. The main contribution of our design study is a novel visual representation for tree-like, multivariate graphs, which we apply to genealogies and clinical data about the individuals in these families. We introduce data-driven aggregation methods to scale to multiple families. By designing the genealogy graph layout to align with a tabular view, we are able to incorporate extensive, multivariate attributes in the analysis of the genealogy without cluttering the graph. We validate our designs by conducting case studies with our domain collaborators.
Identifiants
pubmed: 29993603
doi: 10.1109/TVCG.2018.2811488
pmc: PMC6170727
mid: NIHMS988271
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
1543-1558Subventions
Organisme : NHGRI NIH HHS
ID : R00 HG007583
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH099134
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA198935
Pays : United States
Références
Nat Genet. 2017 Jan;49(1):27-35
pubmed: 27869829
IEEE Trans Vis Comput Graph. 2012 Dec;18(12):2431-40
pubmed: 26357151
Am J Epidemiol. 2015 Mar 1;181(5):295-303
pubmed: 25673816
J Genet Couns. 2008 Oct;17(5):424-33
pubmed: 18792771
Ann Hum Genet. 2012 Nov;76(6):500-9
pubmed: 22989048
IEEE Trans Vis Comput Graph. 2010 Nov-Dec;16(6):1073-81
pubmed: 20975145
Comput Graph Forum. 2016 Jun;35(3):71-80
pubmed: 27942090
BMC Bioinformatics. 2014 Aug 01;15:259
pubmed: 25085009
Genet Epidemiol. 1995;12(3):291-301
pubmed: 7557350
BMC Bioinformatics. 2013;14 Suppl 19:S3
pubmed: 24564375
IEEE Trans Vis Comput Graph. 2010 Nov-Dec;16(6):1027-35
pubmed: 20975140
Bioinformatics. 2005 Jan 15;21(2):263-5
pubmed: 15297300
Eur J Hum Genet. 2005 Aug;13(8):987-9
pubmed: 15870825
BMC Bioinformatics. 2012;13 Suppl 8:S5
pubmed: 22607476
Nat Methods. 2010 Mar;7(3 Suppl):S56-68
pubmed: 20195258
Nature. 2009 Oct 8;461(7265):747-53
pubmed: 19812666
IEEE Trans Vis Comput Graph. 2010 Nov-Dec;16(6):1063-72
pubmed: 20975144
J Hered. 2012 Nov-Dec;103(6):903-7
pubmed: 23087384
Crisis. 2001;22(2):61-5
pubmed: 11727895
IEEE Trans Vis Comput Graph. 2017 Jan;23(1):191-200
pubmed: 27514055
IEEE Comput Graph Appl. 2011 Nov-Dec;31(6):11-5
pubmed: 24808254
IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14(6):1253-60
pubmed: 18988971
Am J Psychiatry. 2010 Sep;167(9):1020-2
pubmed: 20826851
IEEE Trans Vis Comput Graph. 2018 Jan;24(1):205-214
pubmed: 28866521
Bioinformatics. 2005 Apr 15;21(8):1730-2
pubmed: 15377505
PLoS Genet. 2018 Feb 1;14(2):e1007111
pubmed: 29389935
IEEE Trans Vis Comput Graph. 2013 Dec;19(12):2277-86
pubmed: 24051794
Bioinformatics. 2009 Oct 1;25(19):2611-2
pubmed: 19633096
Am J Hum Genet. 1995 Mar;56(3):745-52
pubmed: 7887430
Eur Psychiatry. 2010 Jun;25(5):264-7
pubmed: 20444580
Mol Psychiatry. 2016 Oct;21(10):1381-90
pubmed: 26666204
IEEE Trans Vis Comput Graph. 2012 Sep;18(9):1520-36
pubmed: 22144529
Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14863-8
pubmed: 9843981
IEEE Trans Vis Comput Graph. 2013 Dec;19(12):2516-25
pubmed: 24051818
IEEE Trans Vis Comput Graph. 2014 Dec;20(12):2310-9
pubmed: 26356945
Am J Med Genet B Neuropsychiatr Genet. 2016 Sep;171(6):888-95
pubmed: 27229768
Bioinformatics. 2015 Nov 1;31(21):3546-8
pubmed: 26115986
Comput Graph Forum. 2017 Jun;36(3):251-260
pubmed: 29479126
Comput Graph Forum. 2012 Jun;31(33):1175-1184
pubmed: 27942089
IEEE Trans Vis Comput Graph. 2006 Nov-Dec;12(6):1414-26
pubmed: 17073365