A network map of netrin receptor UNC5B-mediated signaling.

Carcinoma Dependence receptors Gene set enrichment Molecular association Netrin signaling pathway Tumorigenesis

Journal

Journal of cell communication and signaling
ISSN: 1873-9601
Titre abrégé: J Cell Commun Signal
Pays: Netherlands
ID NLM: 101308338

Informations de publication

Date de publication:
Mar 2019
Historique:
received: 16 07 2018
accepted: 01 08 2018
pubmed: 8 8 2018
medline: 8 8 2018
entrez: 8 8 2018
Statut: ppublish

Résumé

UNC-5 Homolog B (UNC5B) is a member of the dependence receptor family. This family of receptors can induce two opposite intracellular signaling cascades depending on the presence or absence of the ligand and is thus capable of driving two opposing processes. UNC5B signaling has been implicated in several cancers, where it induces cell death in the absence of its ligand Netrin-1 and promotes cell survival in its presence. In addition, inhibition of Netrin-1 ligand has been reported to decrease invasiveness and angiogenesis in tumors. UNC5B signaling pathway has also been reported to be involved in several processes such as neural development, developmental angiogenesis and inflammatory processes. However, literature pertaining to UNC5B signaling is scarce and scattered. Considering the importance of UNC5B signaling, we developed a resource of signaling events mediated by UNC5B. Using data mined from published literature, we compiled an integrated pathway map consisting of 88 UNC5B-mediated signaling events and 55 proteins. These signaling events include 27 protein-protein interaction events, 33 catalytic events involving various post-translational modifications, 9 events of UNC5B-mediated protein activation/inhibition, 27 gene regulation events and 2 events of translocation. This pathway resource has been made available to the research community through NetPath ( http://www.netpath.org /), a manually curated resource of signaling pathways (Database URL: http://www.netpath.org/pathways?path_id=NetPath_172 ). The current resource provides a foundation for the understanding of UNC5B-mediated cellular responses. The development of resource will serve researchers to explore the mechanisms of UNC-5B signaling in cancers.

Identifiants

pubmed: 30084000
doi: 10.1007/s12079-018-0485-z
pii: 10.1007/s12079-018-0485-z
pmc: PMC6381369
doi:

Types de publication

Journal Article

Langues

eng

Pagination

121-127

Références

J Neurosci. 1999 Jun 15;19(12):4938-47
pubmed: 10366627
EMBO J. 2001 Jun 1;20(11):2715-22
pubmed: 11387206
Nucleic Acids Res. 2003 Jan 1;31(1):365-70
pubmed: 12520024
Nat Cell Biol. 2003 Mar;5(3):216-23
pubmed: 12598906
Bioinformatics. 2003 Mar 1;19(4):524-31
pubmed: 12611808
Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4173-8
pubmed: 12655055
Cell. 2003 May 30;113(5):657-70
pubmed: 12787506
Nat Biotechnol. 2004 Feb;22(2):177-83
pubmed: 14755292
Nature. 2004 Nov 11;432(7014):179-86
pubmed: 15510105
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7
pubmed: 15608251
EMBO J. 2005 Mar 23;24(6):1192-201
pubmed: 15729359
Science. 2006 Aug 4;313(5787):640-4
pubmed: 16809490
Genes Dev. 2007 Oct 1;21(19):2433-47
pubmed: 17908930
Am J Physiol Renal Physiol. 2008 Apr;294(4):F739-47
pubmed: 18216145
Nat Cell Biol. 2008 Jun;10(6):698-706
pubmed: 18469807
BMC Bioinformatics. 2008 Sep 25;9:399
pubmed: 18817533
Nucleic Acids Res. 2009 Jan;37(Database issue):D767-72
pubmed: 18988627
Mol Cell. 2009 Mar 27;33(6):692-703
pubmed: 19328064
Bioinformatics. 2009 Nov 1;25(21):2860-2
pubmed: 19628504
Methods Mol Biol. 2009;577:67-79
pubmed: 19718509
Curr Opin Oncol. 2010 Jan;22(1):46-54
pubmed: 19934758
Genome Biol. 2010 Jan 12;11(1):R3
pubmed: 20067622
Oncogene. 2010 Apr 1;29(13):1865-82
pubmed: 20173780
J Immunol. 2010 Sep 15;185(6):3750-8
pubmed: 20693423
Nat Biotechnol. 2010 Sep;28(9):935-42
pubmed: 20829833
Nucleic Acids Res. 2011 Jan;39(Database issue):D52-7
pubmed: 21115458
Mol Cell. 2010 Dec 22;40(6):863-76
pubmed: 21172653
Dev Cell. 2011 Jan 18;20(1):33-46
pubmed: 21238923
Mol Biol Cell. 2011 Jun 1;22(11):1943-54
pubmed: 21460185
Database (Oxford). 2011 Jul 08;2011:bar021
pubmed: 21742767
Cell. 2011 Sep 16;146(6):873-87
pubmed: 21925313
Tumour Biol. 2013 Aug;34(4):2099-108
pubmed: 23055195
J Cell Commun Signal. 2013 Mar;7(1):19-23
pubmed: 23161412
J Biol Chem. 2013 Jan 25;288(4):2210-22
pubmed: 23195957
EMBO Mol Med. 2013 Dec;5(12):1821-34
pubmed: 24293316
Vasc Cell. 2014 Jan 28;6(1):1
pubmed: 24472220
Nat Med. 2014 Apr;20(4):377-84
pubmed: 24584118
J Cell Commun Signal. 2014 Jun;8(2):165-70
pubmed: 24584707
Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15226-31
pubmed: 25288737
Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42
pubmed: 25355515
J Bone Miner Res. 2015 May;30(5):837-54
pubmed: 25483983
Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7255-60
pubmed: 26039999
Biochem Biophys Res Commun. 2015 Aug 14;464(1):263-8
pubmed: 26116534
Oncotarget. 2016 Apr 26;7(17):24719-33
pubmed: 27034160
Tumour Biol. 2016 Nov;37(11):14949-14960
pubmed: 27651158
BMC Cancer. 2016 Nov 15;16(1):892
pubmed: 27846823
In Vivo. 2017 May-Jun;31(3):321-328
pubmed: 28438858
Biochem Biophys Res Commun. 2018 Jan 1;495(1):1167-1174
pubmed: 29158083
Cell. 1994 Aug 12;78(3):409-24
pubmed: 8062384

Auteurs

Sameer Ahmed Bhat (SA)

Department of Biotechnology, University of Kashmir, Srinagar, 190006, India.

Sumrati Gurtoo (S)

Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore, 575 018, India.

Sayali Chandrashekhar Deolankar (SC)

Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore, 575 018, India.

Khalid Majid Fazili (KM)

Department of Biotechnology, University of Kashmir, Srinagar, 190006, India.

Jayshree Advani (J)

Institute of Bioinformatics, International Technology Park, Bangalore, 560066, India.
Manipal Academy of Higher Education, Manipal, 576104, India.

Rohan Shetty (R)

Department of Surgical Oncology. Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, 575 018, India.

T S Keshava Prasad (TSK)

Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore, 575 018, India.
Institute of Bioinformatics, International Technology Park, Bangalore, 560066, India.

Shaida Andrabi (S)

Department of Biochemistry, University of Kashmir, Srinagar, 190006, India. shaida.andrabi@uok.edu.in.

Yashwanth Subbannayya (Y)

Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore, 575 018, India. yashwanth@yenepoya.edu.in.

Classifications MeSH