Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol.
3D-SNFG
LiteMol
SNFG
carbohydrate
glycan
glycoprotein
oligosaccharide
structure
symbol nomenclature for glycans
visualization
Journal
Journal of proteome research
ISSN: 1535-3907
Titre abrégé: J Proteome Res
Pays: United States
ID NLM: 101128775
Informations de publication
Date de publication:
01 02 2019
01 02 2019
Historique:
pubmed:
5
9
2018
medline:
20
2
2020
entrez:
5
9
2018
Statut:
ppublish
Résumé
The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X ). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol .
Identifiants
pubmed: 30179493
doi: 10.1021/acs.jproteome.8b00473
doi:
Substances chimiques
Carbohydrates
0
Polysaccharides
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
770-774Subventions
Organisme : Wellcome Trust
ID : 104948
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : U01 CA207824
Pays : United States