A novel aptamer-based test for the rapid and accurate diagnosis of pleural tuberculosis.


Journal

Analytical biochemistry
ISSN: 1096-0309
Titre abrégé: Anal Biochem
Pays: United States
ID NLM: 0370535

Informations de publication

Date de publication:
01 01 2019
Historique:
received: 10 09 2018
revised: 17 10 2018
accepted: 17 10 2018
pubmed: 24 10 2018
medline: 9 11 2019
entrez: 24 10 2018
Statut: ppublish

Résumé

Pleural tuberculosis (pTB) is diagnosed by using a composite reference standard (CRS) since microbiological methods are grossly inadequate and an accurate diagnostic test remains an unmet need. The present study aimed to evaluate the utility of Mycobacterium tuberculosis (Mtb) antigen and DNA-based tests for pTB diagnosis. Patients were classified as 'Definite TB', 'Probable TB' and 'Non-TB' disease according to the CRS. We assessed the performance of in-house antigen detection assays, namely antibody-based Enzyme-Linked ImmunoSorbent Assay (ELISA) and aptamer-based Aptamer-Linked Immobilized Sorbent Assay (ALISA), targeting Mtb HspX protein and DNA-based tests namely, Xpert MTB/RIF and in-house devR-qPCR. ROC curves were generated for the combined group of 'Definite TB' and 'Probable TB' vs. 'Non-TB' disease group and cut-off values were derived to provide specificity of ≥98%. The sensitivity of ALISA was ∼93% vs. ∼24% of ELISA (p-value ≤0.0001). devR-qPCR exhibited a sensitivity of 50% vs. ∼22% of Xpert (p-value ≤0.01). This novel aptamer-based ALISA test surpasses the sensitivity criterion and matches the specificity requirement spelt out in the 'Target product profile' for extrapulmonary tuberculosis samples by Unitaid (Sensitivity ≥80%, Specificity 98%). The superior performance of the aptamer-based ALISA test indicates its translational potential to bridge the existing gap in pTB diagnosis.

Identifiants

pubmed: 30352198
pii: S0003-2697(18)30961-8
doi: 10.1016/j.ab.2018.10.019
pii:
doi:

Substances chimiques

Aptamers, Nucleotide 0
Bacterial Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

80-87

Informations de copyright

Copyright © 2018 Elsevier Inc. All rights reserved.

Auteurs

Pooja Kumari (P)

Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi, 110029, India.

Surabhi Lavania (S)

Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi, 110029, India.

Shaifali Tyagi (S)

Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India.

Abhijeet Dhiman (A)

Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi, 110029, India; Faculty of Pharmacy, Uttarakhand Technical University, Dehradun, Uttarakhand, India.

Deepak Rath (D)

Dr. Ram Manohar Lohia Hospital, New Delhi, 110001, India.

Divya Anthwal (D)

Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India.

Rakesh Kumar Gupta (RK)

Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India.

Neera Sharma (N)

Dr. Ram Manohar Lohia Hospital, New Delhi, 110001, India.

A K Gadpayle (AK)

Dr. Ram Manohar Lohia Hospital, New Delhi, 110001, India.

R S Taneja (RS)

Dr. Ram Manohar Lohia Hospital, New Delhi, 110001, India.

Lokesh Sharma (L)

Dr. Ram Manohar Lohia Hospital, New Delhi, 110001, India.

Yusra Ahmad (Y)

Faculty of Pharmacy, Uttarakhand Technical University, Dehradun, Uttarakhand, India.

Tarun Kumar Sharma (TK)

Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India; AptaBharat Innovation Pvt. Ltd., Translational Health Science and Technology Institute Incubator, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India. Electronic address: tarun@thsti.res.in.

Sagarika Haldar (S)

Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India. Electronic address: sagarika.haldar@gmail.com.

Jaya Sivaswami Tyagi (JS)

Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi, 110029, India; Center for Bio-design and Diagnostics, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, Faridabad, Gurgaon Expressway, PO box #04, Faridabad, 121001, India. Electronic address: jayatyagi.aiims@gmail.com.

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