FlyBase 2.0: the next generation.


Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
08 01 2019
Historique:
received: 20 09 2018
accepted: 09 10 2018
pubmed: 27 10 2018
medline: 8 5 2020
entrez: 27 10 2018
Statut: ppublish

Résumé

FlyBase (flybase.org) is a knowledge base that supports the community of researchers that use the fruit fly, Drosophila melanogaster, as a model organism. The FlyBase team curates and organizes a diverse array of genetic, molecular, genomic, and developmental information about Drosophila. At the beginning of 2018, 'FlyBase 2.0' was released with a significantly improved user interface and new tools. Among these important changes are a new organization of search results into interactive lists or tables (hitlists), enhanced reference lists, and new protein domain graphics. An important new data class called 'experimental tools' consolidates information on useful fly strains and other resources related to a specific gene, which significantly enhances the ability of the Drosophila researcher to design and carry out experiments. With the release of FlyBase 2.0, there has also been a restructuring of backend architecture and a continued development of application programming interfaces (APIs) for programmatic access to FlyBase data. In this review, we describe these major new features and functionalities of the FlyBase 2.0 site and how they support the use of Drosophila as a model organism for biological discovery and translational research.

Identifiants

pubmed: 30364959
pii: 5144957
doi: 10.1093/nar/gky1003
pmc: PMC6323960
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

D759-D765

Subventions

Organisme : Medical Research Council
ID : MR/N030117/1
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : U41 HG000739
Pays : United States

Investigateurs

Norbert Perrimon (N)
Susan Russo Gelbart (SR)
Julie Agapite (J)
Kris Broll (K)
Lynn Crosby (L)
Gilberto Dos Santos (GD)
David Emmert (D)
L Sian Gramates (LS)
Kathleen Falls (K)
Victoria Jenkins (V)
Beverley Matthews (B)
Carol Sutherland (C)
Christopher Tabone (C)
Pinglei Zhou (P)
Mark Zytkovicz (M)
Nick Brown (N)
Giulia Antonazzo (G)
Helen Attrill (H)
Phani Garapati (P)
Alex Holmes (A)
Aoife Larkin (A)
Steven Marygold (S)
Gillian Millburn (G)
Clare Pilgrim (C)
Vitor Trovisco (V)
Pepe Urbano (P)
Thomas Kaufman (T)
Brian Calvi (B)
Bryon Czoch (B)
Josh Goodman (J)
Victor Strelets (V)
Jim Thurmond (J)
Richard Cripps (R)
Phillip Baker (P)

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Auteurs

Jim Thurmond (J)

Department of Biology, Indiana University, Bloomington, IN 47408, USA.

Joshua L Goodman (JL)

Department of Biology, Indiana University, Bloomington, IN 47408, USA.

Victor B Strelets (VB)

Department of Biology, Indiana University, Bloomington, IN 47408, USA.

Helen Attrill (H)

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK.

L Sian Gramates (LS)

The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

Steven J Marygold (SJ)

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK.

Beverley B Matthews (BB)

The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

Gillian Millburn (G)

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK.

Giulia Antonazzo (G)

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK.

Vitor Trovisco (V)

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK.

Thomas C Kaufman (TC)

Department of Biology, Indiana University, Bloomington, IN 47408, USA.

Brian R Calvi (BR)

Department of Biology, Indiana University, Bloomington, IN 47408, USA.

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Classifications MeSH