FlyBase 2.0: the next generation.
Journal
Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011
Informations de publication
Date de publication:
08 01 2019
08 01 2019
Historique:
received:
20
09
2018
accepted:
09
10
2018
pubmed:
27
10
2018
medline:
8
5
2020
entrez:
27
10
2018
Statut:
ppublish
Résumé
FlyBase (flybase.org) is a knowledge base that supports the community of researchers that use the fruit fly, Drosophila melanogaster, as a model organism. The FlyBase team curates and organizes a diverse array of genetic, molecular, genomic, and developmental information about Drosophila. At the beginning of 2018, 'FlyBase 2.0' was released with a significantly improved user interface and new tools. Among these important changes are a new organization of search results into interactive lists or tables (hitlists), enhanced reference lists, and new protein domain graphics. An important new data class called 'experimental tools' consolidates information on useful fly strains and other resources related to a specific gene, which significantly enhances the ability of the Drosophila researcher to design and carry out experiments. With the release of FlyBase 2.0, there has also been a restructuring of backend architecture and a continued development of application programming interfaces (APIs) for programmatic access to FlyBase data. In this review, we describe these major new features and functionalities of the FlyBase 2.0 site and how they support the use of Drosophila as a model organism for biological discovery and translational research.
Identifiants
pubmed: 30364959
pii: 5144957
doi: 10.1093/nar/gky1003
pmc: PMC6323960
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
D759-D765Subventions
Organisme : Medical Research Council
ID : MR/N030117/1
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : U41 HG000739
Pays : United States
Investigateurs
Norbert Perrimon
(N)
Susan Russo Gelbart
(SR)
Julie Agapite
(J)
Kris Broll
(K)
Lynn Crosby
(L)
Gilberto Dos Santos
(GD)
David Emmert
(D)
L Sian Gramates
(LS)
Kathleen Falls
(K)
Victoria Jenkins
(V)
Beverley Matthews
(B)
Carol Sutherland
(C)
Christopher Tabone
(C)
Pinglei Zhou
(P)
Mark Zytkovicz
(M)
Nick Brown
(N)
Giulia Antonazzo
(G)
Helen Attrill
(H)
Phani Garapati
(P)
Alex Holmes
(A)
Aoife Larkin
(A)
Steven Marygold
(S)
Gillian Millburn
(G)
Clare Pilgrim
(C)
Vitor Trovisco
(V)
Pepe Urbano
(P)
Thomas Kaufman
(T)
Brian Calvi
(B)
Bryon Czoch
(B)
Josh Goodman
(J)
Victor Strelets
(V)
Jim Thurmond
(J)
Richard Cripps
(R)
Phillip Baker
(P)
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