The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources.


Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
08 01 2019
Historique:
received: 16 09 2018
accepted: 25 10 2018
pubmed: 9 11 2018
medline: 8 5 2020
entrez: 9 11 2018
Statut: ppublish

Résumé

The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, nomenclature and reagents. New features at ZFIN include increased support for genomic regions and for non-coding genes, and support for more expressive Gene Ontology annotations. ZFIN has recently taken over maintenance of the zebrafish reference genome sequence as part of the Genome Reference Consortium. ZFIN is also a founding member of the Alliance of Genome Resources, a collaboration of six model organism databases (MODs) and the Gene Ontology Consortium (GO). The recently launched Alliance portal (https://alliancegenome.org) provides a unified, comparative view of MOD, GO, and human data, and facilitates foundational and translational biomedical research.

Identifiants

pubmed: 30407545
pii: 5165261
doi: 10.1093/nar/gky1090
pmc: PMC6323962
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

D867-D873

Subventions

Organisme : NHGRI NIH HHS
ID : P41 HG002659
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG010859
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG002273
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG002659
Pays : United States

Références

Development. 2001 Oct;128(20):3877-88
pubmed: 11641213
Genome Biol. 2005;6(5):R44
pubmed: 15892872
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D581-5
pubmed: 16381936
Nucleic Acids Res. 2008 Jan;36(Database issue):D768-72
pubmed: 17991680
Genome Biol. 2009;10(3):R25
pubmed: 19261174
Genome Res. 2009 Sep;19(9):1630-8
pubmed: 19570905
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Brief Bioinform. 2013 Mar;14(2):162-71
pubmed: 23376193
Genome Res. 2013 Apr;23(4):727-35
pubmed: 23382537
Nature. 2013 Apr 25;496(7446):494-7
pubmed: 23594742
Nature. 2013 Apr 25;496(7446):498-503
pubmed: 23594743
BMC Bioinformatics. 2014 May 21;15:155
pubmed: 24885854
Genesis. 2015 Aug;53(8):498-509
pubmed: 26097180
Neural Dev. 2015 Dec 30;10:28
pubmed: 26714454
Genome Biol. 2016 Apr 12;17:66
pubmed: 27072794
Nat Commun. 2016 Aug 22;7:12603
pubmed: 27545838
Nucleic Acids Res. 2017 Jan 4;45(D1):D331-D338
pubmed: 27899567
Nucleic Acids Res. 2017 Jan 4;45(D1):D758-D768
pubmed: 27899582
ILAR J. 2017 Jul 1;58(1):4-16
pubmed: 28838067
Nucleic Acids Res. 2018 Jan 4;46(D1):D736-D742
pubmed: 29140510
Methods Mol Biol. 2018;1757:307-347
pubmed: 29761463
Lab Anim (NY). 2018 Oct;47(10):277-289
pubmed: 30224793

Auteurs

Leyla Ruzicka (L)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Douglas G Howe (DG)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Sridhar Ramachandran (S)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Sabrina Toro (S)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Ceri E Van Slyke (CE)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Yvonne M Bradford (YM)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Anne Eagle (A)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

David Fashena (D)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Ken Frazer (K)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Patrick Kalita (P)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Prita Mani (P)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Ryan Martin (R)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Sierra Taylor Moxon (ST)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Holly Paddock (H)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Christian Pich (C)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Kevin Schaper (K)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Xiang Shao (X)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Amy Singer (A)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Monte Westerfield (M)

The Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH