The European Bioinformatics Institute in 2018: tools, infrastructure and training.

Academies and Institutes Computational Biology / history Databases, Genetic Europe History, 21st Century Humans Software

Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
08 01 2019
Historique:
received: 03 10 2018
accepted: 11 11 2018
pubmed: 18 11 2018
medline: 12 5 2020
entrez: 17 11 2018
Statut: ppublish

Résumé

The European Bioinformatics Institute (https://www.ebi.ac.uk/) archives, curates and analyses life sciences data produced by researchers throughout the world, and makes these data available for re-use globally (https://www.ebi.ac.uk/). Data volumes continue to grow exponentially: total raw storage capacity now exceeds 160 petabytes, and we manage these increasing data flows while maintaining the quality of our services. This year we have improved the efficiency of our computational infrastructure and doubled the bandwidth of our connection to the worldwide web. We report two new data resources, the Single Cell Expression Atlas (https://www.ebi.ac.uk/gxa/sc/), which is a component of the Expression Atlas; and the PDBe-Knowledgebase (https://www.ebi.ac.uk/pdbe/pdbe-kb), which collates functional annotations and predictions for structure data in the Protein Data Bank. Additionally, Europe PMC (http://europepmc.org/) has added preprint abstracts to its search results, supplementing results from peer-reviewed publications. EMBL-EBI maintains over 150 analytical bioinformatics tools that complement our data resources. We make these tools available for users through a web interface as well as programmatically using application programming interfaces, whilst ensuring the latest versions are available for our users. Our training team, with support from all of our staff, continued to provide on-site, off-site and web-based training opportunities for thousands of researchers worldwide this year.

Identifiants

DOI: 10.1093/nar/gky1124 PMID: 30445657 PMC: PMC6323906
pubmed: 30445657
pii: 5184719
doi: 10.1093/nar/gky1124
pmc: PMC6323906
doi:

Types de publication

Historical Article Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

D15-D22

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Nucleic Acids Res. 2019 Jan 8;47(D1):D711-D715
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Nucleic Acids Res. 2019 Jan 8;47(D1):D221-D229
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Nucleic Acids Res. 2019 Jan 8;47(D1):D84-D88
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Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
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Nucleic Acids Res. 2019 Jan 8;47(D1):D930-D940
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Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360
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Nucleic Acids Res. 2019 Jan 8;47(D1):D1172-D1178
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Nucleic Acids Res. 2019 Jan 8;47(D1):D1005-D1012
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Nucleic Acids Res. 2019 Jan 8;47(D1):D482-D489
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Nucleic Acids Res. 2019 Jan 8;47(D1):D1056-D1065
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Nucleic Acids Res. 2019 Jan 8;47(D1):D1073-D1079
pubmed: 30535239

Auteurs

Charles E Cook (CE)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Rodrigo Lopez (R)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Oana Stroe (O)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Guy Cochrane (G)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Cath Brooksbank (C)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Ewan Birney (E)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Rolf Apweiler (R)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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