The exopolysaccharide properties and structures database: EPS-DB. Application to bacterial exopolysaccharides.

Database Exopolysaccharide structure Function Genetics Search Sequence of residues

Journal

Carbohydrate polymers
ISSN: 1879-1344
Titre abrégé: Carbohydr Polym
Pays: England
ID NLM: 8307156

Informations de publication

Date de publication:
01 Feb 2019
Historique:
received: 08 06 2018
revised: 19 10 2018
accepted: 21 10 2018
entrez: 18 11 2018
pubmed: 18 11 2018
medline: 20 12 2018
Statut: ppublish

Résumé

The EPS Database (EPS-DB) is a web-based, platform-independent database of bacterial exopolysaccharides (EPSs) providing access to detailed structural, taxonomic, growth conditions, functional properties, genetic, and bibliographic information for EPSs. It is freely available on the Internet as a website at http://www.epsdatabase.com. Several structural data representation schemes are used following the most commonly accepted formats. This guarantees full interoperability with other structural, experimental, and functional databases in the area of glycoscience. The scientific usage of EPS-DB throughout a user-friendly interface is presented with a subsection of the database exemplified by EPSs from lactic acid bacteria.

Identifiants

pubmed: 30446142
pii: S0144-8617(18)31252-9
doi: 10.1016/j.carbpol.2018.10.063
pii:
doi:

Substances chimiques

Polysaccharides, Bacterial 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

565-570

Informations de copyright

Copyright © 2018 Elsevier Ltd. All rights reserved.

Auteurs

Johnny Birch (J)

Enzyme and Protein Chemistry, Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark. Electronic address: jbirch@epsdatabase.com.

Marie-Rose Van Calsteren (MR)

Saint-Hyacinthe Research and Development Centre, Agriculture and Agri-Food Canada, 3600 Casavant Boulevard West, Saint-Hyacinthe, Quebec J2S 8E3, Canada. Electronic address: Marie-Rose.VanCalsteren@canada.ca.

Serge Pérez (S)

Centre de Recherches sur les Macromolécules Végétales, CNRS, University of Grenoble Alpes, BP53, F-38041 Grenoble Cedex, France. Electronic address: spsergeperez@gmail.com.

Birte Svensson (B)

Enzyme and Protein Chemistry, Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark. Electronic address: bis@bio.dtu.dk.

Articles similaires

Bacteriocins Humans Anti-Bacterial Agents Bacteria Bacterial Infections
Biopolymers Mining Biodegradation, Environmental Polysaccharides, Bacterial Carboxymethylcellulose Sodium
Cholangiocarcinoma Spirulina Humans Cell Line, Tumor Bile Duct Neoplasms
Polysaccharides, Bacterial Hot Springs Pseudomonas alcaligenes Chile Biotechnology

Classifications MeSH