UV Absorption and Magnetic Circular Dichroism Spectra of Purine, Adenine, and Guanine: A Coupled Cluster Study in Vacuo and in Aqueous Solution.


Journal

Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704

Informations de publication

Date de publication:
12 Feb 2019
Historique:
pubmed: 30 11 2018
medline: 23 2 2019
entrez: 30 11 2018
Statut: ppublish

Résumé

The absorption and magnetic circular dichroism (MCD) spectra of purine and of the purine nucleobases adenine and guanine have been calculated in gas phase at the Coupled Cluster Singles and Doubles (CCSD) and Resolution-of-Identity Singles and Approximate Doubles (RI-CC2) levels of theory. Exploiting a new development in the TURBOMOLE program package for computing vertical excitation energies and Faraday [Formula: see text] terms in an implicit solvent approximated by the conductor-like screening model (COSMO) at the CC2 level, we have investigated the solvent effects on the relative positions of the ππ* and nπ* electronic transitions in these three molecules and compared them to the corresponding vacuum results. In the case of adenine, we also included specific solvent effects with a small water cluster. The spectra obtained with the implicit model COSMO are in qualitative agreement with those obtained with explicit water molecules both with and without the inclusion of the bulk solvent effects via the continuum solvent model. This suggests that the inclusion of the electrostatic contributions of the solvent can provide a sufficiently accurate description of the absorption spectra for adenine. The results for purine, adenine, and guanine show that, after the inclusion of bulk solvation, the ππ* states shift to lower energies while at the same time nπ* states show a reversed behavior. The computed MCD spectra show the characteristic bisignate profile found experimentally in all cases, despite, for adenine, remarkable differences in the origin of the individual peaks for different computational methods. Therefore, the ability (or inability) of MCD to determine the relative stability of the L

Identifiants

pubmed: 30495951
doi: 10.1021/acs.jctc.8b00930
doi:

Substances chimiques

Purines 0
Water 059QF0KO0R
Guanine 5Z93L87A1R
Adenine JAC85A2161
purine W60KTZ3IZY

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1242-1254

Auteurs

Sarah Karbalaei Khani (SK)

Arbeitsgruppe Quantenchemie , Ruhr-Universität , Bochum D-44780 , Germany.
DTU Chemistry , Technical University of Denmark , Kemitorvet Build. 207 , DK-2800 Kongens Lyngby , Denmark.

Rasmus Faber (R)

DTU Chemistry , Technical University of Denmark , Kemitorvet Build. 207 , DK-2800 Kongens Lyngby , Denmark.

Fabrizio Santoro (F)

Istituto di Chimica dei Composti Organo-Metallici, Consiglio Nazionale delle Ricerche (ICCOM-CNR) , Area della Ricerca, via G. Moruzzi 1 , I-56124 Pisa , Italy.

Christof Hättig (C)

Arbeitsgruppe Quantenchemie , Ruhr-Universität , Bochum D-44780 , Germany.

Sonia Coriani (S)

DTU Chemistry , Technical University of Denmark , Kemitorvet Build. 207 , DK-2800 Kongens Lyngby , Denmark.

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Classifications MeSH