Analysis pipelines for calcium imaging data.
Journal
Current opinion in neurobiology
ISSN: 1873-6882
Titre abrégé: Curr Opin Neurobiol
Pays: England
ID NLM: 9111376
Informations de publication
Date de publication:
04 2019
04 2019
Historique:
received:
05
06
2018
revised:
11
09
2018
accepted:
19
11
2018
pubmed:
12
12
2018
medline:
11
2
2020
entrez:
12
12
2018
Statut:
ppublish
Résumé
Calcium imaging is a popular tool among neuroscientists because of its capability to monitor in vivo large neural populations across weeks with single neuron and single spike resolution. Before any downstream analysis, the data needs to be pre-processed to extract the location and activity of the neurons and processes in the observed field of view. The ever increasing size of calcium imaging datasets necessitates scalable analysis pipelines that are reproducible and fully automated. This review focuses on recent methods for addressing the pre-processing problems that arise in calcium imaging data analysis, and available software tools for high throughput analysis pipelines.
Identifiants
pubmed: 30529147
pii: S0959-4388(18)30094-1
doi: 10.1016/j.conb.2018.11.004
pii:
doi:
Substances chimiques
Calcium
SY7Q814VUP
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
15-21Informations de copyright
Copyright © 2018 The Author. Published by Elsevier Ltd.. All rights reserved.