The mammalian mitochondrial epitranscriptome.
Journal
Biochimica et biophysica acta. Gene regulatory mechanisms
ISSN: 1876-4320
Titre abrégé: Biochim Biophys Acta Gene Regul Mech
Pays: Netherlands
ID NLM: 101731723
Informations de publication
Date de publication:
03 2019
03 2019
Historique:
received:
01
10
2018
revised:
16
11
2018
accepted:
23
11
2018
pubmed:
12
12
2018
medline:
26
7
2019
entrez:
12
12
2018
Statut:
ppublish
Résumé
Correct expression of the mitochondrially-encoded genes is critical for the production of the components of the oxidative phosphorylation machinery. Post-transcriptional modifications of mitochondrial transcripts have been emerging as an important regulatory feature of mitochondrial gene expression. Here we review the current knowledge on how the mammalian mitochondrial epitranscriptome participates in regulating mitochondrial homeostasis. In particular, we focus on the latest breakthroughs made towards understanding the roles of the modified nucleotides in mitochondrially-encoded ribosomal and transfer RNAs, the enzymes responsible for introducing these modifications and on recent transcriptome-wide studies reporting modifications to mitochondrial messenger RNAs. This article is part of a Special Issue entitled: mRNA modifications in gene expression control edited by Dr. Matthias Soller and Dr. Rupert Fray.
Identifiants
pubmed: 30529456
pii: S1874-9399(18)30078-6
doi: 10.1016/j.bbagrm.2018.11.005
pmc: PMC6414753
pii:
doi:
Substances chimiques
DNA, Mitochondrial
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Pagination
429-446Subventions
Organisme : Medical Research Council
ID : MC_UU_00015/4
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_ 00015/4
Pays : United Kingdom
Informations de copyright
Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.
Références
Biochemistry. 1992 Nov 17;31(45):11012-9
pubmed: 1445839
Nucleic Acids Res. 1980 Jan 11;8(1):143-51
pubmed: 6986611
J Biol Chem. 2013 Oct 25;288(43):31386-99
pubmed: 24036117
Nat Commun. 2018 May 14;9(1):1875
pubmed: 29760464
Orphanet J Rare Dis. 2016 Jul 02;11(1):90
pubmed: 27370603
Mol Cell. 2005 Apr 29;18(3):319-29
pubmed: 15866174
Nature. 2017 Nov 9;551(7679):251-255
pubmed: 29072297
Am J Hum Genet. 2015 Aug 6;97(2):319-28
pubmed: 26189817
Structure. 2002 Oct;10(10):1303-15
pubmed: 12377117
Mol Cell. 2000 Aug;6(2):349-60
pubmed: 10983982
Nat Genet. 2003 Jan;33(1):23-4
pubmed: 12496758
J Mol Biol. 1997 Aug 15;271(2):209-21
pubmed: 9268653
J Mol Biol. 1978 Jun 5;121(4):523-40
pubmed: 671547
Essays Biochem. 2018 Jul 20;62(3):309-320
pubmed: 30030363
Nucleic Acids Res. 2015 Aug 18;43(14):6714-29
pubmed: 26117545
RNA. 2010 May;16(5):1068-77
pubmed: 20360392
PLoS Genet. 2014 Jun 05;10(6):e1004424
pubmed: 24901367
J Biol Chem. 2009 Jul 3;284(27):18218-27
pubmed: 19414587
Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15070-5
pubmed: 15477592
Cell. 2014 Sep 25;159(1):148-162
pubmed: 25219674
Nucleic Acids Res. 2008 Oct;36(17):5472-81
pubmed: 18718926
J Cell Biol. 2016 Mar 14;212(6):611-4
pubmed: 26953349
Trends Biochem Sci. 2017 Aug;42(8):625-639
pubmed: 28285835
Proc Natl Acad Sci U S A. 1982 Nov;79(21):6475-9
pubmed: 6292903
EMBO Rep. 2017 Jan;18(1):28-38
pubmed: 27974379
Nat Rev Mol Cell Biol. 2015 Oct;16(10):581-5
pubmed: 26285676
IUBMB Life. 2000 May;49(5):341-51
pubmed: 10902565
Nature. 1981 Apr 9;290(5806):470-4
pubmed: 7219536
Nat Struct Mol Biol. 2006 Oct;13(10):871-8
pubmed: 16998488
RNA Biol. 2011 Jul-Aug;8(4):616-26
pubmed: 21593607
Biochem Biophys Res Commun. 2018 Sep 10;503(3):2015-2021
pubmed: 30093107
Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12697-702
pubmed: 12242344
J Mol Biol. 1974 Apr 5;84(2):257-73
pubmed: 4133889
Science. 2014 Nov 7;346(6210):718-722
pubmed: 25278503
Cell Rep. 2015 Feb 17;10(6):854-864
pubmed: 25683708
Biochemistry. 2000 Nov 7;39(44):13396-404
pubmed: 11063577
Trends Genet. 2018 Feb;34(2):101-110
pubmed: 29179920
Science. 2016 Jun 17;352(6292):1408-12
pubmed: 27313037
Science. 2015 Jan 30;347(6221):548-51
pubmed: 25635099
Science. 2011 Nov 11;334(6057):817-21
pubmed: 22076379
PLoS One. 2014 Oct 29;9(10):e110799
pubmed: 25353621
J Biol Chem. 2017 Feb 17;292(7):2637-2645
pubmed: 28028173
Science. 1971 May 14;172(3984):725-7
pubmed: 5572899
Genes Dev. 1998 Dec 1;12(23):3650-62
pubmed: 9851972
Biochim Biophys Acta. 1990 Aug 27;1050(1-3):263-6
pubmed: 2207153
Nature. 1981 Apr 9;290(5806):457-65
pubmed: 7219534
Nat Genet. 2002 Jul;31(3):289-94
pubmed: 12068295
J Biomol Struct Dyn. 1999 Feb;16(4):757-74
pubmed: 10217448
Cell Metab. 2016 Dec 13;24(6):875-885
pubmed: 27667664
Trends Biochem Sci. 2002 Jul;27(7):344-51
pubmed: 12114023
J Bacteriol. 2001 Dec;183(23):6957-60
pubmed: 11698387
Nucleic Acids Res. 1982 Jul 24;10(14):4237-45
pubmed: 6750555
RNA. 2000 Oct;6(10):1356-79
pubmed: 11073213
Cell Mol Life Sci. 2018 Jan;75(2):241-260
pubmed: 28752201
Cell Rep. 2015 Feb 24;10(7):1110-21
pubmed: 25704814
RNA Biol. 2012 Sep;9(9):1161-6
pubmed: 23018779
Gene. 1998 Mar 16;209(1-2):45-50
pubmed: 9524218
Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11288-93
pubmed: 26305956
Biomolecules. 2017 Mar 02;7(1):
pubmed: 28257121
Structure. 2012 Nov 7;20(11):1940-7
pubmed: 23022348
EMBO J. 2016 Oct 4;35(19):2104-2119
pubmed: 27497299
Cell Metab. 2013 Mar 5;17(3):386-98
pubmed: 23473033
Elife. 2017 Jul 26;6:
pubmed: 28745585
Nucleic Acids Res. 2008 Nov;36(20):6548-57
pubmed: 18927116
J Biol Chem. 1988 Feb 15;263(5):2447-51
pubmed: 3276688
J Bacteriol. 2002 May;184(10):2692-8
pubmed: 11976298
Methods Mol Biol. 2014;1125:211-27
pubmed: 24590792
PLoS Biol. 2016 Sep 15;14(9):e1002557
pubmed: 27631568
Cell Metab. 2013 Mar 5;17(3):399-410
pubmed: 23473034
Biochem J. 2010 Sep 15;430(3):551-8
pubmed: 20604745
Cell Metab. 2009 Apr;9(4):386-97
pubmed: 19356719
Cell Metab. 2011 May 4;13(5):527-39
pubmed: 21531335
Gene. 2005 Feb 28;347(1):109-14
pubmed: 15715963
Biochimie. 2012 May;94(5):1090-7
pubmed: 22402012
Nat Struct Biol. 1994 Sep;1(9):580-2
pubmed: 7634096
Nature. 2018 Feb 1;554(7690):128-132
pubmed: 29364879
Biochemistry. 2009 Dec 22;48(50):11994-2004
pubmed: 19899814
J Biol Chem. 1960 May;235:1488-98
pubmed: 13811056
J Biol Chem. 2012 Mar 23;287(13):10453-10459
pubmed: 22308031
Cell Biochem Biophys. 2016 Jun;74(2):157-73
pubmed: 27216172
RNA Biol. 2014;11(12):1540-54
pubmed: 25616362
Nucleic Acids Res. 2012 Dec;40(22):11583-93
pubmed: 23042678
J Inherit Metab Dis. 2015 Jul;38(4):655-80
pubmed: 26016801
Biochemistry. 1993 Aug 3;32(30):7617-22
pubmed: 7688564
Nucleic Acids Res. 2017 Jul 7;45(12):7401-7415
pubmed: 28472312
Wiley Interdiscip Rev RNA. 2011 Sep-Oct;2(5):611-31
pubmed: 21823225
J Biol Chem. 2005 May 20;280(20):19823-8
pubmed: 15772074
J Biol Chem. 2006 Jun 9;281(23):15980-6
pubmed: 16597625
Nucleic Acids Res. 2014 Jun;42(11):7346-57
pubmed: 24831542
Nucleic Acids Res. 2012 Jul;40(13):6235-40
pubmed: 22422838
Nat Commun. 2016 Jun 30;7:12039
pubmed: 27356879
Science. 1993 Dec 17;262(5141):1886-9
pubmed: 8266080
EMBO Rep. 2011 Jun;12(6):480-1
pubmed: 21629303
Nat Chem Biol. 2015 Aug;11(8):592-7
pubmed: 26075521
J Mol Biol. 2011 Feb 18;406(2):257-74
pubmed: 21168417
Biochemistry. 1993 Sep 28;32(38):10249-53
pubmed: 8399153
RNA. 2010 Aug;16(8):1584-96
pubmed: 20558545
Nucleic Acids Res. 2018 Jan 4;46(D1):D303-D307
pubmed: 29106616
Nucleic Acids Res. 2018 Sep 19;46(16):8471-8482
pubmed: 30085210
J Biol Chem. 2001 Oct 26;276(43):40041-9
pubmed: 11504732
RNA. 1995 Nov;1(9):886-91
pubmed: 8548653
Nat Chem Biol. 2018 Feb 14;14(3):226-235
pubmed: 29443970
Nature. 1989 Nov 9;342(6246):142-8
pubmed: 2682263
Trends Mol Med. 2014 Jun;20(6):306-14
pubmed: 24581449
Mol Cell. 1999 Nov;4(5):859-64
pubmed: 10619032
Cell. 2009 Nov 25;139(5):934-44
pubmed: 19945377
Nucleic Acids Res. 1980 Nov 11;8(21):4927-41
pubmed: 7443529
EMBO J. 1986 Aug;5(8):2003-8
pubmed: 2875870
Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):35-48
pubmed: 23139145
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3343-7
pubmed: 8475078
EMBO J. 1985 Aug;4(8):2087-92
pubmed: 3905388
J Biol Chem. 1957 Aug;227(2):907-15
pubmed: 13463012
Science. 2015 Apr 3;348(6230):95-98
pubmed: 25838379
Nat New Biol. 1972 Jan 5;235(53):6-9
pubmed: 4336392
Cell. 2008 Oct 31;135(3):462-74
pubmed: 18984158
Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12198-12201
pubmed: 27729525
Nucleic Acids Res. 1985 Dec 9;13(23):8587-601
pubmed: 3001645
Nature. 2017 Nov 23;551(7681):472-477
pubmed: 29143818
Nucleic Acids Res. 2011 Sep 1;39(17):7750-63
pubmed: 21666256
Cell Tissue Res. 2017 Jan;367(1):5-20
pubmed: 27411691
Nucleic Acids Res. 2015 Nov 16;43(20):9950-64
pubmed: 26365242
Curr Opin Struct Biol. 2018 Apr;49:44-53
pubmed: 29348055
RNA. 2005 Aug;11(8):1281-90
pubmed: 16043508
Biochem J. 2017 Jun 13;474(13):2145-2158
pubmed: 28512204
Biochimie. 1996;78(7):605-23
pubmed: 8955904
EMBO J. 2002 Mar 1;21(5):1139-47
pubmed: 11867542
Nucleic Acids Res. 2016 Sep 30;44(17):8020-40
pubmed: 27448410
EMBO J. 2001 Sep 3;20(17):4863-73
pubmed: 11532950
Nucleic Acids Res. 2002 Nov 1;30(21):4751-60
pubmed: 12409466
Nat Commun. 2016 Jul 06;7:12026
pubmed: 27380950
Biochem Biophys Res Commun. 2006 Apr 21;342(4):1130-6
pubmed: 16513084
RNA. 2018 Nov;24(11):1427-1436
pubmed: 30131402
Physiol Rev. 2008 Apr;88(2):611-38
pubmed: 18391175
Nucleic Acids Res. 1978 Nov;5(11):4385-97
pubmed: 724519
PLoS One. 2011 Apr 29;6(4):e19152
pubmed: 21559454
Nucleic Acids Res. 2009 Apr;37(5):1616-27
pubmed: 19151083
Nature. 2014 Jan 23;505(7484):515-9
pubmed: 24362565
Nucleic Acids Res. 1995 Feb 11;23(3):389-94
pubmed: 7885835
Nat Struct Mol Biol. 2010 May;17(5):555-60
pubmed: 20400952
Annu Rev Genet. 2011;45:299-329
pubmed: 21910628
RNA. 1999 Feb;5(2):245-56
pubmed: 10024176
Nat Struct Mol Biol. 2008 Feb;15(2):192-8
pubmed: 18193063
PLoS Genet. 2014 Feb 06;10(2):e1004110
pubmed: 24516400
Nucleic Acids Res. 1998 Nov 15;26(22):5017-35
pubmed: 9801296
Mol Cell Biol. 2002 Feb;22(4):1116-25
pubmed: 11809803
Eur J Biochem. 1990 Mar 10;188(2):275-81
pubmed: 1690648
Cold Spring Harb Symp Quant Biol. 2001;66:195-206
pubmed: 12762022
J Biol Chem. 2002 Jul 26;277(30):27256-64
pubmed: 12011058
Mol Cell Biol. 2017 Oct 13;37(21):
pubmed: 28784718
Nature. 1990 Apr 19;344(6268):787-9
pubmed: 2330033
Proc Natl Acad Sci U S A. 1985 Aug;82(15):4905-9
pubmed: 3860833
Mol Cell Biol. 2013 Aug;33(15):2918-29
pubmed: 23716598
Mol Cell. 2017 Dec 7;68(5):993-1005.e9
pubmed: 29107537
Nature. 2014 Nov 6;515(7525):143-6
pubmed: 25192136
J Biol Chem. 2000 Jun 2;275(22):16414-9
pubmed: 10748051
Biochem J. 2012 Jun 15;444(3):357-73
pubmed: 22642575
Science. 2014 Apr 25;344(6182):413-5
pubmed: 24763589
J Biol Chem. 2006 Jan 27;281(4):2104-13
pubmed: 16317006
Nat Commun. 2018 Oct 3;9(1):4065
pubmed: 30283131
J Biol Chem. 2017 Mar 17;292(11):4519-4532
pubmed: 28082677
RNA. 2012 Dec;18(12):2269-76
pubmed: 23097428
Nucleic Acids Res. 2018 Feb 28;46(4):1565-1583
pubmed: 29390138
Genome Res. 2013 Nov;23(11):1789-96
pubmed: 23913925
Nucleic Acids Res. 1998 Apr 1;26(7):1636-43
pubmed: 9512533
Front Genet. 2015 Mar 10;6:79
pubmed: 25806043
J Biol Chem. 2000 Nov 10;275(45):35063-9
pubmed: 10952987
J Biol Chem. 2008 Feb 8;283(6):3665-3675
pubmed: 18063578
Nucleic Acids Res. 1994 Dec 11;22(24):5378-84
pubmed: 7529407
J Mol Biol. 2006 Sep 29;362(4):771-86
pubmed: 16949614
Biochemistry. 2010 Jun 22;49(24):4934-44
pubmed: 20459084
Mol Cell Biol. 2008 May;28(10):3301-12
pubmed: 18332122
Essays Biochem. 2018 Jul 20;62(3):321-340
pubmed: 29980628
J Mol Biol. 1997 Feb 21;266(2):246-68
pubmed: 9047361
Biochemistry. 1992 Feb 4;31(4):1040-6
pubmed: 1310418
Biochimie. 1995;77(1-2):30-9
pubmed: 7541254
Cell. 2017 Nov 16;171(5):1072-1081.e10
pubmed: 29149603
Nucleic Acids Res. 2011 May;39(10):4284-99
pubmed: 21278163
J Bacteriol. 1997 Mar;179(6):1918-23
pubmed: 9068636
Hum Mol Genet. 2017 Nov 1;26(21):4257-4266
pubmed: 28973171
J Biochem. 1998 Dec 1;124(6):1069-71
pubmed: 9832609
Hum Mol Genet. 1997 Apr;6(4):615-25
pubmed: 9097968
J Biol Chem. 2014 Sep 5;289(36):24936-42
pubmed: 25074936
RNA. 2010 May;16(5):958-68
pubmed: 20354154
Nat Commun. 2018 Sep 27;9(1):3966
pubmed: 30262910
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15253-8
pubmed: 22949673
Biochemistry. 1999 Oct 5;38(40):13338-46
pubmed: 10529209
Nucleic Acids Res. 2015 Mar 11;43(5):2615-24
pubmed: 25690892
Nucleic Acids Res. 1994 Feb 11;22(3):347-53
pubmed: 7510390
J Am Chem Soc. 2007 Nov 7;129(44):13382-3
pubmed: 17941640
Mol Cell Biol. 2005 Feb;25(4):1354-66
pubmed: 15684387
Mol Cell Biol. 2008 Dec;28(24):7514-31
pubmed: 18852288
Nucleic Acids Res. 1981 Jan 24;9(2):323-37
pubmed: 6782552
RNA. 2003 Jun;9(6):760-8
pubmed: 12756333
Nat Struct Mol Biol. 2008 May;15(5):507-14
pubmed: 18425141
Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16209-14
pubmed: 19805282
Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4707-16
pubmed: 26261349
Nat Chem Biol. 2016 Jul;12(7):546-51
pubmed: 27214402
Prog Nucleic Acid Res Mol Biol. 1996;53:79-129
pubmed: 8650309
Cell Cycle. 2011 Sep 1;10(17):2904-16
pubmed: 21857155
Mol Biol Cell. 2014 Sep 1;25(17):2542-55
pubmed: 25009282
Nucleic Acids Res. 1998 Jan 1;26(1):148-53
pubmed: 9399820
Methods Mol Biol. 2009;540:173-91
pubmed: 19381560
Biochem J. 1959 Jun;72(2):294-301
pubmed: 13662298
Annu Rev Biochem. 2016 Jun 2;85:77-101
pubmed: 26789594
Cell Rep. 2015 Feb 17;10(6):920-932
pubmed: 25683715
Science. 1999 Mar 5;283(5407):1476-81
pubmed: 10066161