RegularizedSCA: Regularized simultaneous component analysis of multiblock data in R.
Common/distinctive components
Group Lasso
Lasso
Linked data analysis
Multiblock analysis
Simultaneous component analysis
Journal
Behavior research methods
ISSN: 1554-3528
Titre abrégé: Behav Res Methods
Pays: United States
ID NLM: 101244316
Informations de publication
Date de publication:
10 2019
10 2019
Historique:
pubmed:
14
12
2018
medline:
28
1
2020
entrez:
14
12
2018
Statut:
ppublish
Résumé
This article introduces a package developed for R (R Core Team, 2017) for performing an integrated analysis of multiple data blocks (i.e., linked data) coming from different sources. The methods in this package combine simultaneous component analysis (SCA) with structured selection of variables. The key feature of this package is that it allows to (1) identify joint variation that is shared across all the data sources and specific variation that is associated with one or a few of the data sources and (2) flexibly estimate component matrices with predefined structures. Linked data occur in many disciplines (e.g., biomedical research, bioinformatics, chemometrics, finance, genomics, psychology, and sociology) and especially in multidisciplinary research. Hence, we expect our package to be useful in various fields.
Identifiants
pubmed: 30542912
doi: 10.3758/s13428-018-1163-z
pii: 10.3758/s13428-018-1163-z
pmc: PMC6797642
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2268-2289Références
PLoS One. 2012;7(5):e37840
pubmed: 22693578
J Pers Soc Psychol. 1998 Feb;74(2):435-52
pubmed: 9491586
BMC Genomics. 2009 Jan 20;10:32
pubmed: 19154582
Behav Res Methods. 2013 Sep;45(3):822-33
pubmed: 23361416
J Pediatr. 1991 Feb;118(2):215-9
pubmed: 1993947
Behav Res Methods. 2014 Jun;46(2):576-87
pubmed: 24178130
Anal Bioanal Chem. 2008 Mar;390(5):1241-51
pubmed: 18214448
Am J Prev Med. 2003 Nov;25(4):277-82
pubmed: 14580627
Biostatistics. 2009 Jul;10(3):515-34
pubmed: 19377034
Br J Math Stat Psychol. 2011 May;64(Pt 2):277-90
pubmed: 21492133
BMC Bioinformatics. 2009 Aug 11;10:246
pubmed: 19671149
Int J Health Geogr. 2011 Dec 05;10:64
pubmed: 22142322
BMC Bioinformatics. 2011 Nov 15;12:448
pubmed: 22085701
Int J Epidemiol. 2013 Feb;42(1):111-27
pubmed: 22507743
Sci Rep. 2019 Dec 9;9(1):18608
pubmed: 31819077
Ann Appl Stat. 2013 Mar 1;7(1):523-542
pubmed: 23745156
J Comput Graph Stat. 2010;19(4):930-946
pubmed: 25878487