The aqueous environment as an active participant in the protein folding process.

Algorithms Hydrophobic and Hydrophilic Interactions Models, Molecular Protein Conformation Protein Folding Proteins / chemistry Solutions
External force field Hydrophobic core Protein structure prediction

Journal

Journal of molecular graphics & modelling
ISSN: 1873-4243
Titre abrégé: J Mol Graph Model
Pays: United States
ID NLM: 9716237

Informations de publication

Date de publication:
03 2019
Historique:
received: 12 08 2018
revised: 05 12 2018
accepted: 12 12 2018
pubmed: 24 12 2018
medline: 15 2 2020
entrez: 24 12 2018
Statut: ppublish

Résumé

Existing computational models applied in the protein structure prediction process do not sufficiently account for the presence of the aqueous solvent. The solvent is usually represented by a predetermined number of H

Identifiants

DOI: 10.1016/j.jmgm.2018.12.008 PMID: 30580160
pubmed: 30580160
pii: S1093-3263(18)30605-3
doi: 10.1016/j.jmgm.2018.12.008
pii:
doi:

Substances chimiques

Proteins 0
Solutions 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

227-239

Informations de copyright

Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Auteurs

Małgorzata Gadzała (M)

ACK Cyfronet AGH, Nawojki 11, 30-950, Kraków, Poland.

Dawid Dułak (D)

ABB Business Services Sp. z o.o. ul. Żegańska 1, 04-713, Warszawa, Poland. Electronic address: dawid.dulak@gmail.com.

Barbara Kalinowska (B)

Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, 11 Łojasiewicza Street, Kraków, Poland; Department of Bioinformatics and Telemedicine, Jagiellonian University - Medical College, Łazarza 16, 31-530, Kraków, Poland.

Zbigniew Baster (Z)

Department of Molecular and Interfacial Biophysics, Faculty of Physics, Astronomy, Applied Computer Science Jagiellonian University, 11 Łojasiewicza Street, Kraków, Poland; Markey Cancer Center, University of Kentucky, 789 South Limestone Street, Lexington, KY, USA.

Michał Bryliński (M)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA; Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, 70803, USA.

Leszek Konieczny (L)

Chair of Medical Biochemistry, Jagiellonian University - Medical College, Kopernika 7E, 31-034, Kraków, Poland.

Mateusz Banach (M)

Department of Bioinformatics and Telemedicine, Jagiellonian University - Medical College, Łazarza 16, 31-530, Kraków, Poland.

Irena Roterman (I)

Department of Bioinformatics and Telemedicine, Jagiellonian University - Medical College, Łazarza 16, 31-530, Kraków, Poland. Electronic address: myroterm@cyf-kr.edu.pl.

Articles similaires

Selecting optimal software code descriptors-The case of Java.

Yegor Bugayenko, Zamira Kholmatova, Artem Kruglov et al.
1.00
Software Algorithms Programming Languages

Exploring structural diversity across the protein universe with The Encyclopedia of Domains.

Andy M Lau, Nicola Bordin, Shaun M Kandathil et al.
1.00
Databases, Protein Protein Domains Protein Folding Proteins Deep Learning

Multilabel SegSRGAN-A framework for parcellation and morphometry of preterm brain in MRI.

Guillaume Dollé, Gauthier Loron, Margaux Alloux et al.
1.00
Humans Magnetic Resonance Imaging Brain Infant, Newborn Infant, Premature

Mouse α-synuclein fibrils are structurally and functionally distinct from human fibrils associated with Lewy body diseases.

Arpine Sokratian, Ye Zhou, Meltem Tatli et al.
1.00
alpha-Synuclein Humans Animals Mice Lewy Body Disease

Classifications MeSH

questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Algorithmes › The aqueous environment as an active...
questionsmedicales.fr › Phénomènes chimiques › Interactions hydrophobes et hydrophiles › The aqueous environment as an active...
questionsmedicales.fr › Techniques d'investigation › Modèles théoriques › Modèles moléculaires › The aqueous environment as an active...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Conformation moléculaire › Conformation des protéines › The aqueous environment as an active...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Pliage des protéines › The aqueous environment as an active...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › The aqueous environment as an active...
questionsmedicales.fr › Préparations pharmaceutiques › Solutions › The aqueous environment as an active...