MultiLink Analysis: Brain Network Comparison via Sparse Connectivity Analysis.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
11 01 2019
Historique:
received: 19 06 2018
accepted: 23 11 2018
entrez: 13 1 2019
pubmed: 13 1 2019
medline: 21 1 2020
Statut: epublish

Résumé

The analysis of the brain from a connectivity perspective is revealing novel insights into brain structure and function. Discovery is, however, hindered by the lack of prior knowledge used to make hypotheses. Additionally, exploratory data analysis is made complex by the high dimensionality of data. Indeed, to assess the effect of pathological states on brain networks, neuroscientists are often required to evaluate experimental effects in case-control studies, with hundreds of thousands of connections. In this paper, we propose an approach to identify the multivariate relationships in brain connections that characterize two distinct groups, hence permitting the investigators to immediately discover the subnetworks that contain information about the differences between experimental groups. In particular, we are interested in data discovery related to connectomics, where the connections that characterize differences between two groups of subjects are found. Nevertheless, those connections do not necessarily maximize the accuracy in classification since this does not guarantee reliable interpretation of specific differences between groups. In practice, our method exploits recent machine learning techniques employing sparsity to deal with weighted networks describing the whole-brain macro connectivity. We evaluated our technique on functional and structural connectomes from human and murine brain data. In our experiments, we automatically identified disease-relevant connections in datasets with supervised and unsupervised anatomy-driven parcellation approaches and by using high-dimensional datasets.

Identifiants

pubmed: 30635604
doi: 10.1038/s41598-018-37300-4
pii: 10.1038/s41598-018-37300-4
pmc: PMC6329758
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

65

Subventions

Organisme : NIA NIH HHS
ID : U01 AG024904
Pays : United States
Organisme : Department of Defense
ID : W81XWH-12-2-0012
Pays : International

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Auteurs

Alessandro Crimi (A)

Pattern Analysis and Computer Vision, Istituto Italiano di Tecnologia, Genova, Italy. alessandro.crimi@usz.ch.
Institute of Neuropathology, University Hospital of Zürich, Zürich, Switzerland. alessandro.crimi@usz.ch.

Luca Giancardo (L)

Pattern Analysis and Computer Vision, Istituto Italiano di Tecnologia, Genova, Italy.
Center for Precision Health, School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, USA.

Fabio Sambataro (F)

Department of Experimental and Clinical Medical Sciences, University of Udine, Udine, Italy.

Alessandro Gozzi (A)

Functional Neuroimaging Laboratory, Istituto Italiano di Tecnologia, Rovereto, Italy.

Vittorio Murino (V)

Pattern Analysis and Computer Vision, Istituto Italiano di Tecnologia, Genova, Italy.
Department of Computer Science, University of Verona, Verona, Italy.

Diego Sona (D)

Pattern Analysis and Computer Vision, Istituto Italiano di Tecnologia, Genova, Italy.
Neuroinformatics Laboratory, Fondazione Bruno Kessler, Trento, Italy.

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Classifications MeSH