Complex-centric proteome profiling by SEC-SWATH-MS.
SWATH‐MS
protein complexes
proteome organization
proteomics
size exclusion chromatography
Journal
Molecular systems biology
ISSN: 1744-4292
Titre abrégé: Mol Syst Biol
Pays: England
ID NLM: 101235389
Informations de publication
Date de publication:
14 01 2019
14 01 2019
Historique:
entrez:
16
1
2019
pubmed:
16
1
2019
medline:
7
8
2019
Statut:
epublish
Résumé
Proteins are major effectors and regulators of biological processes that can elicit multiple functions depending on their interaction with other proteins. The organization of proteins into macromolecular complexes and their quantitative distribution across these complexes is, therefore, of great biological and clinical significance. In this paper, we describe an integrated experimental and computational technique to quantify hundreds of protein complexes in a single operation. The method consists of size exclusion chromatography (SEC) to fractionate native protein complexes, SWATH/DIA mass spectrometry to precisely quantify the proteins in each SEC fraction, and the computational framework
Identifiants
pubmed: 30642884
doi: 10.15252/msb.20188438
pmc: PMC6346213
doi:
Substances chimiques
Multiprotein Complexes
0
Proteome
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Pagination
e8438Subventions
Organisme : European Research Council
ID : 670821
Pays : International
Organisme : NIAID NIH HHS
ID : U19 AI106761
Pays : United States
Informations de copyright
© 2019 The Authors. Published under the terms of the CC BY 4.0 license.
Références
Nat Biotechnol. 2014 Mar;32(3):219-23
pubmed: 24727770
Mol Cell Proteomics. 2016 Jul;15(7):2476-90
pubmed: 27114452
Int J Biochem Cell Biol. 2013 Jul;45(7):1327-37
pubmed: 23583660
Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6518-23
pubmed: 16618929
Nature. 2017 May 25;545(7655):505-509
pubmed: 28514442
Nature. 2014 Aug 14;512(7513):161-5
pubmed: 25043011
Cell. 2012 Aug 31;150(5):1068-81
pubmed: 22939629
Nucleic Acids Res. 2010 Jan;38(Database issue):D497-501
pubmed: 19884131
Cell. 2014 Nov 20;159(5):1212-1226
pubmed: 25416956
Nat Methods. 2016 Sep;13(9):777-83
pubmed: 27479329
J Proteome Res. 2008 Jan;7(1):47-50
pubmed: 18067251
Bioinformatics. 2015 Feb 15;31(4):555-62
pubmed: 25348213
Bioessays. 2013 Dec;35(12):1050-5
pubmed: 24114984
Mol Cell. 2015 Jul 16;59(2):143-5
pubmed: 26186288
Nucleic Acids Res. 2015 Jan;43(Database issue):D447-52
pubmed: 25352553
EMBO J. 2007 May 2;26(9):2339-49
pubmed: 17431397
Nat Rev Mol Cell Biol. 2010 Nov;11(11):789-801
pubmed: 20944666
Nat Genet. 2003 Mar;33(3):349-55
pubmed: 12590263
Science. 1949 Nov 25;110(2865):543-8
pubmed: 15395398
Nat Commun. 2017 Aug 21;8(1):291
pubmed: 28827567
Cell. 2006 Apr 7;125(1):187-99
pubmed: 16615899
Ann Biomed Eng. 2011 Apr;39(4):1224-34
pubmed: 21174150
J Proteome Res. 2008 Jan;7(1):29-34
pubmed: 18067246
Nat Struct Mol Biol. 2016 Sep;23(9):778-85
pubmed: 27428775
Cell. 2015 Jul 16;162(2):425-440
pubmed: 26186194
Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15
pubmed: 23203871
Methods Mol Biol. 2012;832:315-37
pubmed: 22350895
Expert Rev Proteomics. 2016 Oct;13(10):951-964
pubmed: 27602509
Nat Biotechnol. 2008 Dec;26(12):1367-72
pubmed: 19029910
J Proteome Res. 2008 May;7(5):1836-49
pubmed: 18336004
Nature. 2016 Mar 31;531(7596):598-603
pubmed: 27029275
FEBS Lett. 2015 Sep 14;589(19 Pt A):2507-13
pubmed: 26096786
Mol Cell Proteomics. 2012 Jun;11(6):O111.016717
pubmed: 22261725
Cell Cycle. 2011 Sep 15;10(18):3057-66
pubmed: 21876386
Expert Rev Proteomics. 2017 Oct;14(10):845-855
pubmed: 28918672
Nature. 2005 Oct 27;437(7063):1381-5
pubmed: 16251969
J Chromatogr A. 2008 Jan 18;1178(1-2):24-32
pubmed: 18076893
Trends Biochem Sci. 2016 Jan;41(1):20-32
pubmed: 26654279
BMB Rep. 2016 Sep;49(9):459-73
pubmed: 27312603
Mol Cell Proteomics. 2013 Dec;12(12):3851-73
pubmed: 24043423
Nature. 2003 Dec 4;426(6966):570-4
pubmed: 14654843
Proteomics. 2016 Aug;16(15-16):2146-59
pubmed: 27145088
Mol Syst Biol. 2019 Jan 14;15(1):e8438
pubmed: 30642884
Nature. 2015 Sep 17;525(7569):339-44
pubmed: 26344197
Nat Commun. 2014 Nov 14;5:5384
pubmed: 25395170
F1000Res. 2016 Apr 29;5:
pubmed: 27158474
Tumour Biol. 2017 Mar;39(3):1010428317692248
pubmed: 28345458
Sci Data. 2014 Sep 16;1:140031
pubmed: 25977788
Nature. 1999 Dec 2;402(6761 Suppl):C47-52
pubmed: 10591225
Nat Methods. 2013 Dec;10(12):1246-53
pubmed: 24162925
Nat Biotechnol. 2016 Nov;34(11):1130-1136
pubmed: 27701404
EMBO J. 2008 Aug 20;27(16):2204-13
pubmed: 18650933
Mol Biosyst. 2013 Jun;9(6):1064-7
pubmed: 23529396
Nat Methods. 2011 May;8(5):430-5
pubmed: 21423193
Nat Methods. 2012 May 30;9(6):555-66
pubmed: 22669653
Methods Mol Biol. 2014;1188:263-70
pubmed: 25059617
Mol Syst Biol. 2017 Jun 8;13(6):932
pubmed: 28596423
J Proteomics. 2009 Feb 15;72(1):4-11
pubmed: 19110081
Mol Cell Proteomics. 2015 Sep;14(9):2301-7
pubmed: 26217018
PLoS One. 2016 Apr 07;11(4):e0153160
pubmed: 27054327