Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
01 09 2019
01 09 2019
Historique:
received:
13
07
2018
revised:
03
12
2018
accepted:
14
01
2019
pubmed:
19
1
2019
medline:
18
6
2020
entrez:
19
1
2019
Statut:
ppublish
Résumé
Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management. Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0. Supplementary data are available at Bioinformatics online.
Identifiants
pubmed: 30657871
pii: 5292316
doi: 10.1093/bioinformatics/btz009
pmc: PMC6736116
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
3140-3142Subventions
Organisme : Austrian Science Fund FWF
ID : P 27975
Pays : Austria
Informations de copyright
© The Author(s) 2019. Published by Oxford University Press.
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