Dynamic Interactions Between the Genome and an Endogenous Retrovirus:
Drosophila
Retrotransposon
Transposable element
chromatin
epigenetic control
piRNA
Journal
G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598
Informations de publication
Date de publication:
07 03 2019
07 03 2019
Historique:
pubmed:
20
1
2019
medline:
10
7
2019
entrez:
20
1
2019
Statut:
epublish
Résumé
All genomes contain repeated sequences that are known as transposable elements (TEs). Among these are endogenous retroviruses (ERVs), which are sequences similar to retroviruses and are transmitted across generations from parent to progeny. These sequences are controlled in genomes through epigenetic mechanisms. At the center of the epigenetic control of TEs are small interfering RNAs of the piRNA class, which trigger heterochromatinization of TE sequences. The
Identifiants
pubmed: 30658967
pii: g3.118.200789
doi: 10.1534/g3.118.200789
pmc: PMC6404621
doi:
Substances chimiques
DNA Transposable Elements
0
RNA, Small Interfering
0
Banques de données
figshare
['10.25387/g3.7578380']
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
855-865Informations de copyright
Copyright © 2019 Fablet et al.
Références
Nature. 2006 Oct 5;443(7111):521-4
pubmed: 17024082
Mol Biol Evol. 2013 Aug;30(8):1816-29
pubmed: 23625890
Nat Rev Genet. 2009 Oct;10(10):691-703
pubmed: 19763152
Bioinformatics. 2015 Oct 1;31(19):3210-2
pubmed: 26059717
Cell. 2007 Mar 23;128(6):1089-103
pubmed: 17346786
J Virol. 2012 Apr;86(7):3675-81
pubmed: 22278247
Nature. 2017 Dec 14;552(7684):268-272
pubmed: 29211718
Mol Biol Evol. 1999 Sep;16(9):1251-5
pubmed: 10486980
Gene. 2000 Apr 18;247(1-2):87-95
pubmed: 10773447
Cell. 2014 Jun 5;157(6):1364-79
pubmed: 24906153
Genome Biol. 2009;10(3):R25
pubmed: 19261174
Methods Mol Biol. 2014;1173:135-46
pubmed: 24920366
Mob DNA. 2016 May 06;7:9
pubmed: 27158268
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
Cell. 1990 Apr 6;61(1):39-48
pubmed: 1690605
Science. 2002 Sep 27;297(5590):2253-6
pubmed: 12351787
Genome Biol. 2014;15(12):550
pubmed: 25516281
Genes Dev. 2013 Feb 15;27(4):390-9
pubmed: 23392610
Nature. 2000 Feb 17;403(6771):785-9
pubmed: 10693809
BMC Bioinformatics. 2005 Feb 15;6:31
pubmed: 15713233
Elife. 2017 Jul 11;6:
pubmed: 28695823
Mol Ecol. 2013 Mar;22(6):1503-17
pubmed: 23293987
Trends Plant Sci. 2010 Aug;15(8):471-8
pubmed: 20541961
Genes Dev. 2006 Aug 15;20(16):2214-22
pubmed: 16882972
Bioinformatics. 2010 Mar 1;26(5):676-7
pubmed: 20071372
PLoS Comput Biol. 2018 Aug 17;14(8):e1006360
pubmed: 30118475
Nat Rev Genet. 2007 Apr;8(4):272-85
pubmed: 17363976
Science. 2007 Nov 2;318(5851):761-4
pubmed: 17975059
PLoS Genet. 2014 Feb 06;10(2):e1004138
pubmed: 24516406
Nucleic Acids Res. 2017 Feb 28;45(4):e17
pubmed: 28204592
Nature. 2009 Oct 22;461(7267):1130-4
pubmed: 19847266
Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140331
pubmed: 26323762
EMBO Rep. 2013 May;14(5):458-64
pubmed: 23559065
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Nat Rev Mol Cell Biol. 2011 Apr;12(4):246-58
pubmed: 21427766
BMC Bioinformatics. 2015 Apr 29;16:137
pubmed: 25924884
PLoS Genet. 2011 Sep;7(9):e1002301
pubmed: 21980304
Genes Dev. 2015 Aug 15;29(16):1747-62
pubmed: 26302790
Mol Phylogenet Evol. 2013 Jan;66(1):417-22
pubmed: 23000819
Genome Res. 2002 Apr;12(4):656-64
pubmed: 11932250
J Mol Evol. 2007 Apr;64(4):438-47
pubmed: 17390093
Bioinformatics. 2011 Jan 1;27(1):130-1
pubmed: 21088025
Genome Biol. 2013 Apr 25;14(4):R36
pubmed: 23618408
FASEB J. 2009 May;23(5):1482-9
pubmed: 19141532
Trends Genet. 2017 Nov;33(11):817-831
pubmed: 28844698
Cell. 2012 Nov 21;151(5):964-80
pubmed: 23159368
Bioinformatics. 2011 Mar 15;27(6):863-4
pubmed: 21278185
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
BMC Evol Biol. 2001;1:3
pubmed: 11591216
Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14964-9
pubmed: 18809914
J Comput Biol. 2010 Nov;17(11):1519-33
pubmed: 20958248
Nat Rev Genet. 2007 Dec;8(12):973-82
pubmed: 17984973
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Gene. 2006 Jun 21;375:54-62
pubmed: 16626897