"Second-generation" fluorogenic RNA-based sensors.
Biosensors
Fluorogenic dye
Light-up aptamer
Live-cell imaging
RNA
Journal
Methods (San Diego, Calif.)
ISSN: 1095-9130
Titre abrégé: Methods
Pays: United States
ID NLM: 9426302
Informations de publication
Date de publication:
15 05 2019
15 05 2019
Historique:
received:
15
10
2018
revised:
11
01
2019
accepted:
13
01
2019
pubmed:
21
1
2019
medline:
19
6
2020
entrez:
21
1
2019
Statut:
ppublish
Résumé
A fluorogenic aptamer can specifically interact with a fluorophore to activate its fluorescence. These nucleic acid-based fluorogenic modules have been dramatically developed over the past decade, and have been used as versatile reporters in the sensor development and for intracellular imaging. In this review, we summarize the design principles, applications, and challenges of the first-generation fluorogenic RNA-based sensors. Moreover, we discuss some strategies to develop next-generation biosensors with improved sensitivity, selectivity, quantification property, and eukaryotic robustness. Using genetically encoded catalytic hairpin assembly strategy as an example, we further introduce a standard protocol to design, characterize, and apply these fluorogenic RNA-based sensors for in vitro detection and cellular imaging of target biomolecules. By incorporating natural RNA machineries, nucleic acid nanotechnology, and systematic evolution approaches, next-generation fluorogenic RNA-based devices can be potentially engineered to be widely applied in cell biology and biomedicine.
Identifiants
pubmed: 30660865
pii: S1046-2023(18)30273-1
doi: 10.1016/j.ymeth.2019.01.008
pmc: PMC6589113
mid: NIHMS1518991
pii:
doi:
Substances chimiques
Aptamers, Nucleotide
0
Fluorescent Dyes
0
RNA
63231-63-0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
24-34Subventions
Organisme : NIAID NIH HHS
ID : R01 AI136789
Pays : United States
Informations de copyright
Copyright © 2019 Elsevier Inc. All rights reserved.
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