Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.
Bacteria
High-throughput nucleotide sequencing
dental caries
metagenome
microbiota
Journal
Journal of oral microbiology
ISSN: 2000-2297
Titre abrégé: J Oral Microbiol
Pays: United States
ID NLM: 101551049
Informations de publication
Date de publication:
2019
2019
Historique:
received:
16
11
2018
revised:
05
12
2018
accepted:
07
12
2018
entrez:
24
1
2019
pubmed:
24
1
2019
medline:
24
1
2019
Statut:
epublish
Résumé
Studies of the microbiome associated with dental caries have largely relied on 16S rRNA sequence analysis, which is associated with PCR biases, low taxonomic resolution, and inability to accurately study functions. Here, we employed whole metagenome shotgun sequencing, coupled with high-resolution analysis algorithm, to analyze supragingival microbiomes from 30 children with or without dental caries. A total of 726 bacterial strains belonging to 406 species, in addition to 34 bacteriophages were identified. A core bacteriome was identified at the species and strain levels. Species of
Identifiants
pubmed: 30671194
doi: 10.1080/20002297.2018.1557986
pii: 1557986
pmc: PMC6327923
doi:
Types de publication
Journal Article
Langues
eng
Pagination
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