Collaborative efforts to forecast seasonal influenza in the United States, 2015-2016.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
24 01 2019
Historique:
received: 25 05 2018
accepted: 09 11 2018
entrez: 26 1 2019
pubmed: 27 1 2019
medline: 11 8 2020
Statut: epublish

Résumé

Since 2013, the Centers for Disease Control and Prevention (CDC) has hosted an annual influenza season forecasting challenge. The 2015-2016 challenge consisted of weekly probabilistic forecasts of multiple targets, including fourteen models submitted by eleven teams. Forecast skill was evaluated using a modified logarithmic score. We averaged submitted forecasts into a mean ensemble model and compared them against predictions based on historical trends. Forecast skill was highest for seasonal peak intensity and short-term forecasts, while forecast skill for timing of season onset and peak week was generally low. Higher forecast skill was associated with team participation in previous influenza forecasting challenges and utilization of ensemble forecasting techniques. The mean ensemble consistently performed well and outperformed historical trend predictions. CDC and contributing teams will continue to advance influenza forecasting and work to improve the accuracy and reliability of forecasts to facilitate increased incorporation into public health response efforts.

Identifiants

pubmed: 30679458
doi: 10.1038/s41598-018-36361-9
pii: 10.1038/s41598-018-36361-9
pmc: PMC6346105
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

683

Subventions

Organisme : Medical Research Council
ID : MR/R015600/1
Pays : United Kingdom
Organisme : NIGMS NIH HHS
ID : R01 GM100467
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM119582
Pays : United States
Organisme : NIGMS NIH HHS
ID : U01 GM110748
Pays : United States

Investigateurs

Roni Rosenfeld (R)
Nehemias Ulloa (N)
Katie Will (K)
James Turtle (J)
David Bacon (D)
Steven Riley (S)
Wan Yang (W)

Références

Science. 2005 Oct 14;310(5746):248-9
pubmed: 16224011
Vaccine. 2007 Jun 28;25(27):5086-96
pubmed: 17544181
Clin Infect Dis. 2011 Jan 1;52 Suppl 1:S27-35
pubmed: 21342896
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20425-30
pubmed: 23184969
Nat Commun. 2013;4:2837
pubmed: 24302074
PLoS One. 2014 Apr 08;9(4):e94130
pubmed: 24714027
PLoS Comput Biol. 2014 Apr 24;10(4):e1003583
pubmed: 24762780
MMWR Morb Mortal Wkly Rep. 2015 Jun 5;64(21):583-90
pubmed: 26042650
MMWR Morb Mortal Wkly Rep. 2016 Jun 10;65(22):567-75
pubmed: 27281364
BMC Infect Dis. 2016 Jul 22;16:357
pubmed: 27449080
J R Soc Interface. 2016 Oct;13(123):
pubmed: 27733698
Epidemics. 2016 Dec;17:19-26
pubmed: 27770752
BMC Med. 2017 Mar 1;15(1):42
pubmed: 28245814
PLoS Comput Biol. 2017 Mar 10;13(3):e1005248
pubmed: 28282375
Stat Med. 2017 Dec 30;36(30):4908-4929
pubmed: 28905403
Am J Epidemiol. 2018 May 1;187(5):1040-1050
pubmed: 29053783
PLoS Comput Biol. 2017 Nov 6;13(11):e1005801
pubmed: 29107987
PLoS Comput Biol. 2018 Feb 20;14(2):e1005910
pubmed: 29462167
Epidemics. 2018 Sep;24:26-33
pubmed: 29506911

Auteurs

Craig J McGowan (CJ)

Epidemiology and Prevention Branch, Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Matthew Biggerstaff (M)

Epidemiology and Prevention Branch, Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, USA. mbiggerstaff@cdc.gov.

Michael Johansson (M)

Dengue Branch, Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Karyn M Apfeldorf (KM)

Arete Associates, Northridge, California, USA.

Michal Ben-Nun (M)

Predictive Science, Inc., San Diego, California, USA.

Logan Brooks (L)

Computer Science Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

Matteo Convertino (M)

Division of Media and Network Technologies and Division of Frontier Science, Graduate School of Information Science and Technology, Gi-CoRE Station for Big Data & Cybersecurity, Hokkaido University, Sapporo, Japan.
Division of Environmental Health Sciences, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.

Madhav Erraguntla (M)

Knowledge Based Systems, Inc., College Station, Texas, USA.

David C Farrow (DC)

Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

John Freeze (J)

Knowledge Based Systems, Inc., College Station, Texas, USA.

Saurav Ghosh (S)

Discovery Analytics Center, Virginia Tech University, Arlington, Virginia, USA.

Sangwon Hyun (S)

Department of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

Sasikiran Kandula (S)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York, USA.

Joceline Lega (J)

Department of Mathematics, University of Arizona, Tucson, Arizona, USA.

Yang Liu (Y)

Division of Environmental Health Sciences, School of Public Health, University of Minnesota, Minneapolis, Minnesota, USA.

Nicholas Michaud (N)

Department of Statistics, University of California, Berkeley, Berkeley, California, USA.

Haruka Morita (H)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York, USA.

Jarad Niemi (J)

Department of Statistics, Iowa State University, Ames, Iowa, USA.

Naren Ramakrishnan (N)

Discovery Analytics Center, Virginia Tech University, Arlington, Virginia, USA.

Evan L Ray (EL)

Department of Mathematics and Statistics, Mount Holyoke College, South Hadley, Massachusetts, USA.

Nicholas G Reich (NG)

Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, Amherst, Massachusetts, USA.

Pete Riley (P)

Predictive Science, Inc., San Diego, California, USA.

Jeffrey Shaman (J)

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York, USA.

Ryan Tibshirani (R)

Department of Statistics and Data Science, Machine Learning Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

Alessandro Vespignani (A)

Northeastern University, Boston, Massachusetts, USA.

Qian Zhang (Q)

Northeastern University, Boston, Massachusetts, USA.

Carrie Reed (C)

Epidemiology and Prevention Branch, Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH