A Simplified Genomic Profiling Approach Predicts Outcome in Metastatic Colorectal Cancer.

NGS chemotherapy genomic profiling precision medicine predictive

Journal

Cancers
ISSN: 2072-6694
Titre abrégé: Cancers (Basel)
Pays: Switzerland
ID NLM: 101526829

Informations de publication

Date de publication:
27 01 2019
Historique:
received: 24 12 2018
revised: 19 01 2019
accepted: 22 01 2019
entrez: 30 1 2019
pubmed: 30 1 2019
medline: 30 1 2019
Statut: epublish

Résumé

The response of metastatic colorectal cancer (mCRC) to the first-line conventional combination therapy is highly variable, reflecting the elevated heterogeneity of the disease. The genetic alterations underlying this heterogeneity have been thoroughly characterized through omic approaches requiring elevated efforts and costs. In order to translate the knowledge of CRC molecular heterogeneity into a practical clinical approach, we utilized a simplified Next Generation Sequencing (NGS) based platform to screen a cohort of 77 patients treated with first-line conventional therapy. Samples were sequenced using a panel of hotspots and targeted regions of 22 genes commonly involved in CRC. This revealed 51 patients carrying actionable gene mutations, 22 of which carried druggable alterations. These mutations were frequently associated with additional genetic alterations. To take into account this molecular complexity and assisted by an unbiased bioinformatic analysis, we defined three subgroups of patients carrying distinct molecular patterns. We demonstrated these three molecular subgroups are associated with a different response to first-line conventional combination therapies. The best outcome was achieved in patients exclusively carrying mutations on

Identifiants

pubmed: 30691222
pii: cancers11020147
doi: 10.3390/cancers11020147
pmc: PMC6406354
pii:
doi:

Types de publication

Journal Article

Langues

eng

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Auteurs

Carlo Capalbo (C)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. carlo.capalbo@uniroma1.it.
Department of Medical Oncology Sant' Andrea Hospital, I-00189 Rome, Italy. carlo.capalbo@uniroma1.it.

Francesca Belardinilli (F)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. francesca.belardinilli@uniroma1.it.

Domenico Raimondo (D)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. domenico.raimondo@uniroma1.it.

Edoardo Milanetti (E)

Department of Physics, University La Sapienza, 00185 Rome, Italy. edoardo.milanetti@uniroma1.it.

Umberto Malapelle (U)

Department of Public Health, University Federico II, 80131 Naples, Italy. umberto.malapelle@unina.it.

Pasquale Pisapia (P)

Department of Public Health, University Federico II, 80131 Naples, Italy. pasquale.pisapia@unina.it.

Valentina Magri (V)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. valentina.magri@uniroma1.it.

Alessandra Prete (A)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. alessandra.prete@uniroma1.it.

Silvia Pecorari (S)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. silvia.pecorari@uniroma1.it.

Mariarosaria Colella (M)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. colella.1624422@studenti.uniroma1.it.

Anna Coppa (A)

Department of Experimental Medicine, University La Sapienza, 00161 Rome, Italy. anna.coppa@uniroma1.it.

Caterina Bonfiglio (C)

National Institute of Gastroenterology-Research Hospital, IRCCS "S. de Bellis", Castellana Grotte, 70013 Bari, Italy. catia.bonfiglio@irccsdebellis.it.

Arianna Nicolussi (A)

Department of Experimental Medicine, University La Sapienza, 00161 Rome, Italy. arianna.nicolussi@uniroma1.it.

Virginia Valentini (V)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. virginia.valentini@uniroma1.it.

Alessandra Tessitore (A)

Department of Biotechnological and Applied Clinical Sciences, University of L'Aquila, 67100 L'Aquila, Italy. alessandra.tessitore@univaq.it.

Beatrice Cardinali (B)

Institute of Cell Biology and Neurobiology, National Research Council, Campus A. Buzzati-Traverso, 00015 Monterotondo Scalo, Italy. beatrice.cardinali@cnr.it.

Marialaura Petroni (M)

Center for Life Nano Science@Sapienza, Istituto Italiano di Tecnologia, 00161 Rome, Italy. marialaura.petroni@iit.it.

Paola Infante (P)

Center for Life Nano Science@Sapienza, Istituto Italiano di Tecnologia, 00161 Rome, Italy. paola.infante@iit.it.

Matteo Santoni (M)

Oncology Unit, Macerata Hospital, 62012 Macerata, Italy. mattymo@alice.it.

Marco Filetti (M)

Department of Medical Oncology Sant' Andrea Hospital, I-00189 Rome, Italy. marco.filetti@uniroma1.it.

Valeria Colicchia (V)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. valeria.colicchia@uniroma1.it.

Paola Paci (P)

Institute for Systems Analysis and Computer Science "Antonio Ruberti", National Research Council, 00185 Rome, Italy. paola.paci@iasi.cnr.it.

Silvia Mezi (S)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. silvia.mezi@uniroma1.it.

Flavia Longo (F)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. flavia.longo@uniroma1.it.

Enrico Cortesi (E)

Department of Radiological Oncological and Pathological Sciences, University La Sapienza, 00161 Rome, Italy. enrico.cortesi@uniroma1.it.

Paolo Marchetti (P)

Department of Medical Oncology Sant' Andrea Hospital, I-00189 Rome, Italy. paolo.marchetti@uniroma1.it.

Giancarlo Troncone (G)

Department of Public Health, University Federico II, 80131 Naples, Italy. giancarlo.troncone@unina.it.

Diana Bellavia (D)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. diana.bellavia@uniroma1.it.

Gianluca Canettieri (G)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. gianluca.canettieri@uniroma1.it.
Pasteur Institute-Cenci Bolognetti Foundation, 00161 Rome, Italy. gianluca.canettieri@uniroma1.it.

Giuseppe Giannini (G)

Department of Molecular Medicine, University La Sapienza, 00161 Rome, Italy. giuseppe.giannini@uniroma1.it.
Pasteur Institute-Cenci Bolognetti Foundation, 00161 Rome, Italy. giuseppe.giannini@uniroma1.it.

Classifications MeSH