Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines.


Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
29 01 2019
Historique:
received: 03 09 2018
accepted: 08 01 2019
entrez: 30 1 2019
pubmed: 30 1 2019
medline: 11 4 2020
Statut: epublish

Résumé

The use of misidentified and contaminated cell lines continues to be a problem in biomedical research. Research Resource Identifiers (RRIDs) should reduce the prevalence of misidentified and contaminated cell lines in the literature by alerting researchers to cell lines that are on the list of problematic cell lines, which is maintained by the International Cell Line Authentication Committee (ICLAC) and the Cellosaurus database. To test this assertion, we text-mined the methods sections of about two million papers in PubMed Central, identifying 305,161 unique cell-line names in 150,459 articles. We estimate that 8.6% of these cell lines were on the list of problematic cell lines, whereas only 3.3% of the cell lines in the 634 papers that included RRIDs were on the problematic list. This suggests that the use of RRIDs is associated with a lower reported use of problematic cell lines.

Identifiants

pubmed: 30693867
doi: 10.7554/eLife.41676
pii: 41676
pmc: PMC6351100
doi:
pii:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIDDK NIH HHS
ID : U24 DK097771
Pays : United States
Organisme : NIH Office of the Director
ID : OD024432
Pays : International
Organisme : NIH HHS
ID : R43 OD024432
Pays : United States
Organisme : NIH Blueprint for Neuroscience Research
ID : DA039832
Pays : International
Organisme : NIH HHS
ID : MH119094
Pays : United States
Organisme : NIMH NIH HHS
ID : R44 MH119094
Pays : United States
Organisme : NIDDK NIH HHS
ID : DK097771
Pays : United States

Informations de copyright

© 2019, Babic et al.

Déclaration de conflit d'intérêts

ZB, TG No competing interests declared, AC runs the cell bank in Australia and heads the ICLAC consortium. MM, AB heads the RRID project, and founded SciCrunch, a company that supports the RRID project. AB develops the Cellosaurus database. IO works as a consultant for SciCrunch.

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Auteurs

Zeljana Babic (Z)

Center for Research in Biological Systems, University of California, San Diego, San Diego, United States.

Amanda Capes-Davis (A)

Children's Medical Research Institute, University of Sydney, Westmead, Australia.

Maryann E Martone (ME)

Department of Neuroscience, University of California, San Diego, United States.
SciCrunch Inc, San Diego, United States.

Amos Bairoch (A)

Computer and Laboratory Investigation of Proteins of Human Origin, Swiss Institute of Bioinformatics, Geneva, Switzerland.
Department of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland.

I Burak Ozyurt (IB)

Center for Research in Biological Systems, University of California, San Diego, San Diego, United States.

Thomas H Gillespie (TH)

Neurosciences Graduate Program, University of California, San Diego, United States.

Anita E Bandrowski (AE)

Center for Research in Biological Systems, University of California, San Diego, San Diego, United States.

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