Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines.
authentication
cell line
computational biology
none
reproducibility
rigor
software
systems biology
text mining
Journal
eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614
Informations de publication
Date de publication:
29 01 2019
29 01 2019
Historique:
received:
03
09
2018
accepted:
08
01
2019
entrez:
30
1
2019
pubmed:
30
1
2019
medline:
11
4
2020
Statut:
epublish
Résumé
The use of misidentified and contaminated cell lines continues to be a problem in biomedical research. Research Resource Identifiers (RRIDs) should reduce the prevalence of misidentified and contaminated cell lines in the literature by alerting researchers to cell lines that are on the list of problematic cell lines, which is maintained by the International Cell Line Authentication Committee (ICLAC) and the Cellosaurus database. To test this assertion, we text-mined the methods sections of about two million papers in PubMed Central, identifying 305,161 unique cell-line names in 150,459 articles. We estimate that 8.6% of these cell lines were on the list of problematic cell lines, whereas only 3.3% of the cell lines in the 634 papers that included RRIDs were on the problematic list. This suggests that the use of RRIDs is associated with a lower reported use of problematic cell lines.
Identifiants
pubmed: 30693867
doi: 10.7554/eLife.41676
pii: 41676
pmc: PMC6351100
doi:
pii:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIDDK NIH HHS
ID : U24 DK097771
Pays : United States
Organisme : NIH Office of the Director
ID : OD024432
Pays : International
Organisme : NIH HHS
ID : R43 OD024432
Pays : United States
Organisme : NIH Blueprint for Neuroscience Research
ID : DA039832
Pays : International
Organisme : NIH HHS
ID : MH119094
Pays : United States
Organisme : NIMH NIH HHS
ID : R44 MH119094
Pays : United States
Organisme : NIDDK NIH HHS
ID : DK097771
Pays : United States
Informations de copyright
© 2019, Babic et al.
Déclaration de conflit d'intérêts
ZB, TG No competing interests declared, AC runs the cell bank in Australia and heads the ICLAC consortium. MM, AB heads the RRID project, and founded SciCrunch, a company that supports the RRID project. AB develops the Cellosaurus database. IO works as a consultant for SciCrunch.
Références
Sci Rep. 2017 Aug 21;7(1):9020
pubmed: 28827783
PeerJ. 2013 Sep 05;1:e148
pubmed: 24032093
J Biomol Tech. 2018 Jul;29(2):25-38
pubmed: 29805321
Clin Cancer Res. 2011 Dec 1;17(23):7248-64
pubmed: 21868764
Nat Rev Cancer. 2010 Jun;10(6):441-8
pubmed: 20448633
PLoS One. 2016 Jan 05;11(1):e0146300
pubmed: 26730820
PLoS One. 2017 Jan 20;12(1):e0170384
pubmed: 28107433
Neuron. 2016 May 4;90(3):434-6
pubmed: 27151636
Nature. 2012 Dec 13;492(7428):186
pubmed: 23235867
J Clin Endocrinol Metab. 2008 Nov;93(11):4331-41
pubmed: 18713817
Brain Behav. 2015 Dec 08;6(1):e00417
pubmed: 27110440
PLoS One. 2015 Feb 25;10(2):e0116218
pubmed: 25714623
Int J Cancer. 2017 Mar 1;140(5):1209-1214
pubmed: 27870004
PLoS Biol. 2017 Apr 17;15(4):e2001438
pubmed: 28414712
Cancer Res. 2017 Jun 1;77(11):2784-2788
pubmed: 28455420
Int J Cancer. 2010 Jul 1;127(1):1-8
pubmed: 20143388
Science. 2015 Feb 27;347(6225):938-40
pubmed: 25722392
PLoS One. 2017 Oct 12;12(10):e0186281
pubmed: 29023500