A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data.

TLS refinement XRPD jumping crystals molecular dynamics phase transitions

Journal

IUCrJ
ISSN: 2052-2525
Titre abrégé: IUCrJ
Pays: England
ID NLM: 101623101

Informations de publication

Date de publication:
01 Jan 2019
Historique:
received: 13 09 2018
accepted: 27 11 2018
entrez: 5 2 2019
pubmed: 5 2 2019
medline: 5 2 2019
Statut: epublish

Résumé

By running a temperature series of molecular dynamics (MD) simulations starting from the known low-temperature phase, the experimentally observed phase transition in a 'jumping crystal' was captured, thereby providing a prediction of the unknown crystal structure of the high-temperature phase and clarifying the phase-transition mechanism. The phase transition is accompanied by a discontinuity in two of the unit-cell parameters. The structure of the high-temperature phase is very similar to that of the low-temperature phase. The anisotropic displacement parameters calculated from the MD simulations readily identified libration as the driving force behind the phase transition. Both the predicted crystal structure and the phase-transition mechanism were verified experimentally using TLS (translation, libration, screw) refinement against X-ray powder diffraction data.

Identifiants

pubmed: 30713711
doi: 10.1107/S205225251801686X
pii: fc5028
pmc: PMC6327187
doi:

Types de publication

Journal Article

Langues

eng

Pagination

136-144

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Auteurs

Jacco van de Streek (J)

Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark.
Institute for Inorganic and Analytical Chemistry, Goethe-University Frankfurt, Frankfurt am Main, Germany.

Edith Alig (E)

Institute for Inorganic and Analytical Chemistry, Goethe-University Frankfurt, Frankfurt am Main, Germany.

Simon Parsons (S)

School of Chemistry/Centre for Science at Extreme Conditions, University of Edinburgh, Edinburgh, UK.

Liana Vella-Zarb (L)

Chemistry Department, University of Malta, Msida, Malta.

Classifications MeSH