A multiscale model of mechanotransduction by the ankyrin chains of the NOMPC channel.


Journal

The Journal of general physiology
ISSN: 1540-7748
Titre abrégé: J Gen Physiol
Pays: United States
ID NLM: 2985110R

Informations de publication

Date de publication:
04 03 2019
Historique:
received: 28 09 2018
accepted: 12 12 2018
pubmed: 8 2 2019
medline: 27 5 2020
entrez: 8 2 2019
Statut: ppublish

Résumé

Our senses of touch and hearing are dependent on the conversion of external mechanical forces into electrical impulses by the opening of mechanosensitive channels in sensory cells. This remarkable feat involves the conversion of a macroscopic mechanical displacement into a subnanoscopic conformational change within the ion channel. The mechanosensitive channel NOMPC, responsible for hearing and touch in flies, is a homotetramer composed of four pore-forming transmembrane domains and four helical chains of 29 ankyrin repeats that extend 150 Å into the cytoplasm. Previous work has shown that the ankyrin chains behave as biological springs under extension and that tethering them to microtubules could be involved in the transmission of external forces to the NOMPC gate. Here we combine normal mode analysis (NMA), full-atom molecular dynamics simulations, and continuum mechanics to characterize the material properties of the chains under extreme compression and extension. NMA reveals that the lowest-frequency modes of motion correspond to fourfold symmetric compression/extension along the channel, and the lowest-frequency symmetric mode for the isolated channel domain involves rotations of the TRP domain, a putative gating element. Finite element modeling reveals that the ankyrin chains behave as a soft spring with a linear, effective spring constantof 22 pN/nm for deflections ≤15 Å. Force-balance analysis shows that the entire channel undergoes rigid body rotation during compression, and more importantly, each chain exerts a positive twisting moment on its respective linker helices and TRP domain. This torque is a model-independent consequence of the bundle geometry and would cause a clockwise rotation of the TRP domain when viewed from the cytoplasm. Force transmission to the channel for compressions >15 Å depends on the nature of helix-helix contact. Our work reveals that compression of the ankyrin chains imparts a rotational torque on the TRP domain, which potentially results in channel opening.

Identifiants

pubmed: 30728217
pii: jgp.201812266
doi: 10.1085/jgp.201812266
pmc: PMC6400526
doi:

Substances chimiques

Ankyrins 0
Drosophila Proteins 0
NOMPC protein, Drosophila 0
Transient Receptor Potential Channels 0

Banques de données

PDB
['5VKQ']

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

316-327

Subventions

Organisme : NIBIB NIH HHS
ID : T32 EB009383
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL007731
Pays : United States

Informations de copyright

© 2019 Argudo et al.

Références

Nature. 2013 Dec 5;504(7478):113-8
pubmed: 24305161
Nature. 2013 Jan 10;493(7431):221-5
pubmed: 23222543
Biophys J. 2017 May 23;112(10):2159-2172
pubmed: 28538153
Mol Biosyst. 2008 May;4(5):372-9
pubmed: 18414734
J Chem Theory Comput. 2015 Aug 11;11(8):3696-713
pubmed: 26574453
J Biomech. 2010 Dec 1;43(16):3162-7
pubmed: 20825942
Bioinformatics. 2014 Sep 15;30(18):2681-3
pubmed: 24849577
J Mol Biol. 1985 Feb 5;181(3):423-47
pubmed: 2580101
Bioinformatics. 2011 Jun 1;27(11):1575-7
pubmed: 21471012
Curr Biol. 2013 May 6;23(9):755-63
pubmed: 23583554
Curr Biol. 2013 May 6;23(9):R349-51
pubmed: 23660354
Curr Opin Struct Biol. 2005 Oct;15(5):586-92
pubmed: 16143512
J Chem Phys. 2005 Jun 22;122(24):244912
pubmed: 16035821
Annu Rev Biochem. 2007;76:387-417
pubmed: 17579562
Biophys J. 2007 Feb 15;92(4):1204-14
pubmed: 17114232
Curr Biol. 2004 Mar 23;14(6):R224-6
pubmed: 15043829
J Chem Phys. 2005 Nov 15;123(19):194504
pubmed: 16321097
Cell. 2015 Sep 10;162(6):1391-403
pubmed: 26359990
Nat Protoc. 2015 Jun;10(6):845-58
pubmed: 25950237
Nature. 2006 Mar 9;440(7081):246-9
pubmed: 16415852
J Mol Graph. 1996 Feb;14(1):33-8, 27-8
pubmed: 8744570
Annu Rev Biophys. 2010;39:23-42
pubmed: 20192781
Nature. 2017 Jul 6;547(7661):118-122
pubmed: 28658211
Nature. 2013 Dec 5;504(7478):107-12
pubmed: 24305160
Biophys J. 2006 Aug 15;91(4):1248-63
pubmed: 16731564
EMBO J. 2002 Dec 2;21(23):6387-96
pubmed: 12456646
Structure. 2005 Apr;13(4):669-82
pubmed: 15837205

Auteurs

David Argudo (D)

Cardiovascular Research Institute, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA.

Sara Capponi (S)

Cardiovascular Research Institute, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA.

Neville P Bethel (NP)

Cardiovascular Research Institute, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA.

Michael Grabe (M)

Cardiovascular Research Institute, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA michael.grabe@ucsf.edu.

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Classifications MeSH