Predicting opioid dependence from electronic health records with machine learning.

Artificial intelligence Electronic health records Electronic medical records Machine learning Opioid dependence Opioid epidemic

Journal

BioData mining
ISSN: 1756-0381
Titre abrégé: BioData Min
Pays: England
ID NLM: 101319161

Informations de publication

Date de publication:
2019
Historique:
received: 27 10 2018
accepted: 22 01 2019
entrez: 8 2 2019
pubmed: 8 2 2019
medline: 8 2 2019
Statut: epublish

Résumé

The opioid epidemic in the United States is averaging over 100 deaths per day due to overdose. The effectiveness of opioids as pain treatments, and the drug-seeking behavior of opioid addicts, leads physicians in the United States to issue over 200 million opioid prescriptions every year. To better understand the biomedical profile of opioid-dependent patients, we analyzed information from electronic health records (EHR) including lab tests, vital signs, medical procedures, prescriptions, and other data from millions of patients to predict opioid substance dependence. We trained a machine learning model to classify patients by likelihood of having a diagnosis of substance dependence using EHR data from patients diagnosed with substance dependence, along with control patients with no history of substance-related conditions, matched by age, gender, and status of HIV, hepatitis C, and sickle cell disease. The top machine learning classifier using all features achieved a mean area under the receiver operating characteristic (AUROC) curve of ~ 92%, and analysis of the model uncovered associations between basic clinical factors and substance dependence. Additionally, diagnoses, prescriptions, and procedures prior to the diagnoses of substance dependence were analyzed to elucidate the clinical profile of substance-dependent patients, relative to controls. The predictive model may hold utility for identifying patients at risk of developing dependence, risk of overdose, and opioid-seeking patients that report other symptoms in their visits to the emergency room.

Sections du résumé

BACKGROUND BACKGROUND
The opioid epidemic in the United States is averaging over 100 deaths per day due to overdose. The effectiveness of opioids as pain treatments, and the drug-seeking behavior of opioid addicts, leads physicians in the United States to issue over 200 million opioid prescriptions every year. To better understand the biomedical profile of opioid-dependent patients, we analyzed information from electronic health records (EHR) including lab tests, vital signs, medical procedures, prescriptions, and other data from millions of patients to predict opioid substance dependence.
RESULTS RESULTS
We trained a machine learning model to classify patients by likelihood of having a diagnosis of substance dependence using EHR data from patients diagnosed with substance dependence, along with control patients with no history of substance-related conditions, matched by age, gender, and status of HIV, hepatitis C, and sickle cell disease. The top machine learning classifier using all features achieved a mean area under the receiver operating characteristic (AUROC) curve of ~ 92%, and analysis of the model uncovered associations between basic clinical factors and substance dependence. Additionally, diagnoses, prescriptions, and procedures prior to the diagnoses of substance dependence were analyzed to elucidate the clinical profile of substance-dependent patients, relative to controls.
CONCLUSIONS CONCLUSIONS
The predictive model may hold utility for identifying patients at risk of developing dependence, risk of overdose, and opioid-seeking patients that report other symptoms in their visits to the emergency room.

Identifiants

pubmed: 30728857
doi: 10.1186/s13040-019-0193-0
pii: 193
pmc: PMC6352440
doi:

Types de publication

Journal Article

Langues

eng

Pagination

3

Subventions

Organisme : NIGMS NIH HHS
ID : T32 GM062754
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001433
Pays : United States
Organisme : NCI NIH HHS
ID : U24 CA224260
Pays : United States
Organisme : NHLBI NIH HHS
ID : U54 HL127624
Pays : United States
Organisme : NIH HHS
ID : OT3 OD025467
Pays : United States

Déclaration de conflit d'intérêts

This study has been granted exemption from human-subject research by the Program for the Protection of Human Subjects (PPHS) at the Institutional Review Boards (IRB), Mount Sinai Health System. The project number is HS#:18–00993.The authors declare that they have no competing interests.Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Références

Fam Pract Manag. 2008 Apr;15(4):A3-5
pubmed: 18444310
Am Fam Physician. 2000 Apr 15;61(8):2401-8
pubmed: 10794581
Aust N Z J Surg. 1979 Dec;49(6):738-42
pubmed: 294270
Sci Rep. 2016 May 17;6:26094
pubmed: 27185194
Med Care. 2016 Oct;54(10):901-6
pubmed: 27623005
MMWR Morb Mortal Wkly Rep. 2016 Dec 30;65(50-51):1445-1452
pubmed: 28033313
Acta Anaesthesiol Scand. 1993 Apr;37(3):245-9
pubmed: 8517098
J Biomed Inform. 2017 Dec;76:59-68
pubmed: 29113935
Crit Care Med. 2016 Aug;44(8):1545-52
pubmed: 27002274
Radiology. 1982 Apr;143(1):29-36
pubmed: 7063747
Ann Emerg Med. 2013 Oct;62(4):281-9
pubmed: 23849618
J Pain. 2015 Apr;16(4):380-7
pubmed: 25640294
Annu Rev Public Health. 2016;37:61-81
pubmed: 26667605
Drug Alcohol Depend. 2014 May 1;138:202-8
pubmed: 24679839
Am J Med. 2016 Jul;129(7):699-705.e4
pubmed: 26968469
Hepatogastroenterology. 2007 Dec;54(80):2216-20
pubmed: 18265636
PLoS Comput Biol. 2012;8(12):e1002823
pubmed: 23300414
IEEE J Biomed Health Inform. 2017 Jan;21(1):22-30
pubmed: 27913366
Clin Infect Dis. 2009 Aug 15;49(4):561-73
pubmed: 19589081
Mayo Clin Proc. 2008 Jan;83(1):66-76
pubmed: 18174009
Am J Psychiatry. 2015 Apr;172(4):316-20
pubmed: 25827030
Anesthesiology. 1999 Dec;91(6):1633-8
pubmed: 10598604
JAMA Psychiatry. 2015 Feb;72(2):143-51
pubmed: 25536289
AMIA Annu Symp Proc. 2013 Nov 16;2013:527-36
pubmed: 24551355
Am J Public Health. 2001 Feb;91(2):296-9
pubmed: 11211643
Ann Intern Med. 1978 Mar;88(3):424-6
pubmed: 629506
NPJ Digit Med. 2018 May 8;1:18
pubmed: 31304302
Pain Med. 2012 Sep;13(9):1162-73
pubmed: 22845054

Auteurs

Randall J Ellis (RJ)

1Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029 USA.

Zichen Wang (Z)

1Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029 USA.

Nicholas Genes (N)

2Department of Emergency Medicine, Mount Sinai Hospital, New York, NY 10029 USA.

Avi Ma'ayan (A)

1Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029 USA.

Classifications MeSH