Modeling Point Spread Function in Fluorescence Microscopy With a Sparse Gaussian Mixture: Tradeoff Between Accuracy and Efficiency.


Journal

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society
ISSN: 1941-0042
Titre abrégé: IEEE Trans Image Process
Pays: United States
ID NLM: 9886191

Informations de publication

Date de publication:
Aug 2019
Historique:
pubmed: 15 2 2019
medline: 3 1 2020
entrez: 15 2 2019
Statut: ppublish

Résumé

Deblurring is a fundamental inverse problem in bioimaging. It requires modeling the point spread function (PSF), which captures the optical distortions entailed by the image formation process. The PSF limits the spatial resolution attainable for a given microscope. However, recent applications require a higher resolution and have prompted the development of super-resolution techniques to achieve sub-pixel accuracy. This requirement restricts the class of suitable PSF models to analog ones. In addition, deblurring is computationally intensive, hence further requiring computationally efficient models. A custom candidate fitting both the requirements is the Gaussian model. However, this model cannot capture the rich tail structures found in both the theoretical and empirical PSFs. In this paper, we aim at improving the reconstruction accuracy beyond the Gaussian model, while preserving its computational efficiency. We introduce a new class of analog PSF models based on the Gaussian mixtures. The number of Gaussian kernels controls both the modeling accuracy and the computational efficiency of the model: the lower the number of kernels, the lower the accuracy and the higher the efficiency. To explore the accuracy-efficiency tradeoff, we propose a variational formulation of the PSF calibration problem, where a convex sparsity-inducing penalty on the number of Gaussian kernels allows trading accuracy for efficiency. We derive an efficient algorithm based on a fully split formulation of alternating split Bregman. We assess our framework on synthetic and real data, and demonstrate a better reconstruction accuracy in both geometry and photometry in point source localization-a fundamental inverse problem in fluorescence microscopy.

Identifiants

pubmed: 30762548
doi: 10.1109/TIP.2019.2898843
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

3688-3702

Auteurs

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Classifications MeSH