Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.


Journal

Interdisciplinary sciences, computational life sciences
ISSN: 1867-1462
Titre abrégé: Interdiscip Sci
Pays: Germany
ID NLM: 101515919

Informations de publication

Date de publication:
Mar 2019
Historique:
received: 21 08 2018
accepted: 02 02 2019
revised: 28 01 2019
pubmed: 23 2 2019
medline: 27 6 2019
entrez: 22 2 2019
Statut: ppublish

Résumé

Many scientific applications entail solving the subgraph isomorphism problem, i.e., given an input pattern graph, find all the subgraphs of a (usually much larger) target graph that are structurally equivalent to that input. Because subgraph isomorphism is NP-complete, methods to solve it have to use heuristics. This work evaluates subgraph isomorphism methods to assess their computational behavior on a wide range of synthetic and real graphs. Surprisingly, our experiments show that, among the leading algorithms, certain heuristics based only on pattern graphs are the most efficient.

Identifiants

pubmed: 30790228
doi: 10.1007/s12539-019-00323-0
pii: 10.1007/s12539-019-00323-0
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

21-32

Subventions

Organisme : MIUR
ID : Dipartimenti di Eccellenza 2018-2022
Organisme : MIUR
ID : SCN_00451
Organisme : Regione del Veneto
ID : 2016-JPVR16FNCL
Organisme : Regione del Veneto
ID : 2017-B33C17000440003
Organisme : Regione del Veneto (IT)
ID : 2016-JPVR16FNCL
Organisme : U.S. National Science Foundation
ID : MCB-1158273
Organisme : U.S. National Science Foundation
ID : IOS-1339362
Organisme : U.S. National Science Foundation
ID : MCB-1412232

Auteurs

Antonino Aparo (A)

Department of Computer Science, University of Verona, Verona, Italy.

Vincenzo Bonnici (V)

Department of Computer Science, University of Verona, Verona, Italy.

Giovanni Micale (G)

Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy.

Alfredo Ferro (A)

Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy.

Dennis Shasha (D)

Computer Science Department, Courant Institute, New York University, New York, USA.

Alfredo Pulvirenti (A)

Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy.

Rosalba Giugno (R)

Department of Computer Science, University of Verona, Verona, Italy. rosalba.giugno@univr.it.

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Classifications MeSH