Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.
Networks biology
Search strategy
Subgraph isomorphism
Journal
Interdisciplinary sciences, computational life sciences
ISSN: 1867-1462
Titre abrégé: Interdiscip Sci
Pays: Germany
ID NLM: 101515919
Informations de publication
Date de publication:
Mar 2019
Mar 2019
Historique:
received:
21
08
2018
accepted:
02
02
2019
revised:
28
01
2019
pubmed:
23
2
2019
medline:
27
6
2019
entrez:
22
2
2019
Statut:
ppublish
Résumé
Many scientific applications entail solving the subgraph isomorphism problem, i.e., given an input pattern graph, find all the subgraphs of a (usually much larger) target graph that are structurally equivalent to that input. Because subgraph isomorphism is NP-complete, methods to solve it have to use heuristics. This work evaluates subgraph isomorphism methods to assess their computational behavior on a wide range of synthetic and real graphs. Surprisingly, our experiments show that, among the leading algorithms, certain heuristics based only on pattern graphs are the most efficient.
Identifiants
pubmed: 30790228
doi: 10.1007/s12539-019-00323-0
pii: 10.1007/s12539-019-00323-0
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
21-32Subventions
Organisme : MIUR
ID : Dipartimenti di Eccellenza 2018-2022
Organisme : MIUR
ID : SCN_00451
Organisme : Regione del Veneto
ID : 2016-JPVR16FNCL
Organisme : Regione del Veneto
ID : 2017-B33C17000440003
Organisme : Regione del Veneto (IT)
ID : 2016-JPVR16FNCL
Organisme : U.S. National Science Foundation
ID : MCB-1158273
Organisme : U.S. National Science Foundation
ID : IOS-1339362
Organisme : U.S. National Science Foundation
ID : MCB-1412232