CorneaNet: fast segmentation of cornea OCT scans of healthy and keratoconic eyes using deep learning.


Journal

Biomedical optics express
ISSN: 2156-7085
Titre abrégé: Biomed Opt Express
Pays: United States
ID NLM: 101540630

Informations de publication

Date de publication:
01 Feb 2019
Historique:
received: 12 10 2018
revised: 29 11 2018
accepted: 07 12 2018
entrez: 26 2 2019
pubmed: 26 2 2019
medline: 26 2 2019
Statut: epublish

Résumé

Deep learning has dramatically improved object recognition, speech recognition, medical image analysis and many other fields. Optical coherence tomography (OCT) has become a standard of care imaging modality for ophthalmology. We asked whether deep learning could be used to segment cornea OCT images. Using a custom-built ultrahigh-resolution OCT system, we scanned 72 healthy eyes and 70 keratoconic eyes. In total, 20,160 images were labeled and used for the training in a supervised learning approach. A custom neural network architecture called CorneaNet was designed and trained. Our results show that CorneaNet is able to segment both healthy and keratoconus images with high accuracy (validation accuracy: 99.56%). Thickness maps of the three main corneal layers (epithelium, Bowman's layer and stroma) were generated both in healthy subjects and subjects suffering from keratoconus. CorneaNet is more than 50 times faster than our previous algorithm. Our results show that deep learning algorithms can be used for OCT image segmentation and could be applied in various clinical settings. In particular, CorneaNet could be used for early detection of keratoconus and more generally to study other diseases altering corneal morphology.

Identifiants

pubmed: 30800504
doi: 10.1364/BOE.10.000622
pii: 348063
pmc: PMC6377876
doi:

Types de publication

Journal Article

Langues

eng

Pagination

622-641

Déclaration de conflit d'intérêts

The authors declare that there are no conflicts of interest related to this article.

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Auteurs

Valentin Aranha Dos Santos (VA)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.

Leopold Schmetterer (L)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.
Christian Doppler Laboratory for Ocular and Dermal Effects of Thiomers, Medical University of Vienna, Austria.
Singapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Department of Ophthalmology, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore.

Hannes Stegmann (H)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.
Christian Doppler Laboratory for Ocular and Dermal Effects of Thiomers, Medical University of Vienna, Austria.

Martin Pfister (M)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.
Christian Doppler Laboratory for Ocular and Dermal Effects of Thiomers, Medical University of Vienna, Austria.
Institute of Applied Physics, Vienna University of Technology, Austria.

Alina Messner (A)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.

Gerald Schmidinger (G)

Department of Ophthalmology and Optometry, Medical University of Vienna, Austria.

Gerhard Garhofer (G)

Department of Clinical Pharmacology, Medical University of Vienna, Austria.

René M Werkmeister (RM)

Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria.
Christian Doppler Laboratory for Ocular and Dermal Effects of Thiomers, Medical University of Vienna, Austria.

Classifications MeSH