Isothermal Analysis of ThermoFluor Data can readily provide Quantitative Binding Affinities.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
25 02 2019
Historique:
received: 23 07 2018
accepted: 30 11 2018
entrez: 27 2 2019
pubmed: 26 2 2019
medline: 20 9 2020
Statut: epublish

Résumé

Differential scanning fluorimetry (DSF), also known as ThermoFluor or Thermal Shift Assay, has become a commonly-used approach for detecting protein-ligand interactions, particularly in the context of fragment screening. Upon binding to a folded protein, most ligands stabilize the protein; thus, observing an increase in the temperature at which the protein unfolds as a function of ligand concentration can serve as evidence of a direct interaction. While experimental protocols for this assay are well-developed, it is not straightforward to extract binding constants from the resulting data. Because of this, DSF is often used to probe for an interaction, but not to quantify the corresponding binding constant (K

Identifiants

pubmed: 30804351
doi: 10.1038/s41598-018-37072-x
pii: 10.1038/s41598-018-37072-x
pmc: PMC6389909
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2650

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM112736
Pays : United States

Références

ACS Omega. 2018 Jan 31;3(1):760-768
pubmed: 29399652
Int J Pharm. 2005 Jan 31;289(1-2):1-30
pubmed: 15652195
Sci Rep. 2017 Jul 28;7(1):6812
pubmed: 28754988
Biochemistry. 2005 Apr 5;44(13):5258-66
pubmed: 15794662
Methods Enzymol. 2011;493:277-98
pubmed: 21371595
J Biomol Screen. 2002 Feb;7(1):21-8
pubmed: 11897052
Chem Rev. 1997 Aug 5;97(5):1251-1268
pubmed: 11851450
ChemMedChem. 2017 Aug 8;12(15):1201-1211
pubmed: 28618179
J Med Chem. 2017 Jan 12;60(1):128-145
pubmed: 27982595
PLoS One. 2014 Jun 10;9(6):e98800
pubmed: 24915177
Bioinformatics. 2012 Feb 1;28(3):439-40
pubmed: 22135419
Biophys Chem. 1998 Feb 16;70(2):101-8
pubmed: 9540203
Anal Biochem. 2013 Feb 1;433(1):43-7
pubmed: 23098701
J Biomol Screen. 2015 Apr;20(4):552-9
pubmed: 25385011
Biochemistry. 1990 Jul 24;29(29):6927-40
pubmed: 2204424
J Med Chem. 2013 Jun 13;56(11):4497-508
pubmed: 23672613
Protein Sci. 1997 Jan;6(1):141-6
pubmed: 9007986
Protein Sci. 1995 Oct;4(10):2138-48
pubmed: 8535251
Structure. 2018 Mar 6;26(3):467-476.e4
pubmed: 29429879
J Vis Exp. 2014 Sep 13;(91):51809
pubmed: 25285605
J Struct Biol. 2010 Oct;172(1):142-57
pubmed: 20609391
Anal Biochem. 2006 Oct 15;357(2):289-98
pubmed: 16962548
Nat Protoc. 2006;1(6):2527-35
pubmed: 17406506
J Biol Chem. 1967 Sep 25;242(18):4221-9
pubmed: 4964830
J Biomol Screen. 2008 Jun;13(5):337-42
pubmed: 18448703
Int J Mol Sci. 2009 Jun 10;10(6):2662-2680
pubmed: 19582223
ChemMedChem. 2015 Sep;10(9):1511-21
pubmed: 26259992
Protein Sci. 1994 Nov;3(11):1984-91
pubmed: 7703845
Sci Rep. 2018 Jan 23;8(1):1457
pubmed: 29362420
PeerJ. 2018 Feb 26;6:e4412
pubmed: 29503769
Science. 2013 Jul 5;341(6141):84-7
pubmed: 23828940
J Med Chem. 2017 Jun 22;60(12):4923-4931
pubmed: 28537726
Methods. 2017 Jan 15;113:64-71
pubmed: 27794454
J Mol Biol. 1990 May 20;213(2):385-91
pubmed: 2160545
Front Mol Biosci. 2018 Feb 13;5:15
pubmed: 29487854
Mol Microbiol. 2017 Oct;106(2):223-235
pubmed: 28755524
Nat Protoc. 2006;1(6):2733-41
pubmed: 17406529
Nat Protoc. 2007;2(9):2212-21
pubmed: 17853878
Curr Protoc Protein Sci. 2015 Feb 02;79:28.9.1-28.9.14
pubmed: 25640896
J Med Chem. 2015 Jul 9;58(13):5208-17
pubmed: 26068403
Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20523-8
pubmed: 18077363
J Biol Chem. 2003 Sep 5;278(36):34555-67
pubmed: 12794084
PLoS One. 2017 Dec 19;12(12):e0189546
pubmed: 29261728
Biochemistry. 2010 Dec 28;49(51):10831-41
pubmed: 21050007
ACS Chem Biol. 2018 Jan 19;13(1):36-44
pubmed: 29202222
Nat Rev Drug Discov. 2014 Feb;13(2):105-21
pubmed: 24481311
Nature. 2010 Dec 23;468(7327):1067-73
pubmed: 20871596
J Biol Chem. 2005 Mar 25;280(12):11704-12
pubmed: 15634672
Anal Biochem. 2005 Oct 15;345(2):187-97
pubmed: 16140252
Anal Biochem. 2002 Mar 15;302(2):184-90
pubmed: 11878796
J Biol Chem. 1983 Nov 25;258(22):13665-72
pubmed: 6358208
J Biomol Screen. 2009 Jul;14(6):700-7
pubmed: 19470714
Cell Rep. 2017 Oct 31;21(5):1386-1398
pubmed: 29091774
Anal Biochem. 2011 Apr 1;411(1):155-7
pubmed: 21138727
Q Rev Biophys. 2016 Jan;49:e9
pubmed: 27658613
Biochemistry. 2003 May 6;42(17):5058-64
pubmed: 12718549
J Pharm Biomed Anal. 2010 Sep 5;52(5):802-8
pubmed: 20376913
ACS Omega. 2017 Feb 28;2(2):685-697
pubmed: 28626832
Biophys J. 2008 Oct;95(7):3222-31
pubmed: 18599640
Chembiochem. 2014 Mar 3;15(4):575-86
pubmed: 24482078
Appl Microbiol Biotechnol. 2010 Sep;88(1):187-97
pubmed: 20535468
Biotechnol J. 2014 Oct;9(10):1259-66
pubmed: 25112199
J Biomol Screen. 2001 Dec;6(6):429-40
pubmed: 11788061
Anal Biochem. 2013 Dec 1;443(1):52-7
pubmed: 23994566
Anal Biochem. 2004 Sep 15;332(2):261-73
pubmed: 15325294
Anal Biochem. 2004 Sep 1;332(1):153-9
pubmed: 15301960
Drug Discov Today. 2005 Nov 15;10(22):1543-50
pubmed: 16257377
ACS Comb Sci. 2013 Aug 12;15(8):387-92
pubmed: 23710551
Biopolymers. 1987 Nov;26(11):1859-77
pubmed: 3689874
Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):451-7
pubmed: 16552147
Curr Opin Drug Discov Devel. 2010 Jul;13(4):389-402
pubmed: 20597025

Auteurs

Nan Bai (N)

Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Department of Molecular Biosciences, University of Kansas, Lawrence, KS, 66045, USA.

Heinrich Roder (H)

Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.

Alex Dickson (A)

Department of Biochemistry & Molecular Biology and Department of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, 48824, USA.

John Karanicolas (J)

Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. john.karanicolas@fccc.edu.

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