Identifying Free Energy Hot-Spots in Molecular Transformations.


Journal

The journal of physical chemistry. A
ISSN: 1520-5215
Titre abrégé: J Phys Chem A
Pays: United States
ID NLM: 9890903

Informations de publication

Date de publication:
14 Mar 2019
Historique:
pubmed: 2 3 2019
medline: 2 3 2019
entrez: 2 3 2019
Statut: ppublish

Résumé

The free energy is one of the central quantities in material and natural sciences. While being well-established, e.g., in drug design or catalyst optimization, computational methods lack a straightforward way to gain deeper insights into the calculated free energy, and thus the underlying chemical or physical processes. Here, we present a generally applicable, spectrum-based ansatz that tackles this shortcoming by identifying contributions from specific atoms or groups to the vibrational free energy. We illustrate this in studies of the bromodomain-inhibitor binding and the anomeric effect in glucose providing quantitative evidence in line with chemical intuition in both cases. For the latter example we also report an experimental infrared spectrum and find excellent agreement with our simulated spectra.

Identifiants

pubmed: 30821451
doi: 10.1021/acs.jpca.8b12309
doi:

Types de publication

Journal Article

Langues

eng

Pagination

2163-2170

Auteurs

Johannes C B Dietschreit (JCB)

Chair of Theoretical Chemistry, Department of Chemistry , University of Munich (LMU) , Butenandtstr. 7 , D-81377 München , Germany.
Center for Integrated Protein Science (CIPSM) at the Department of Chemistry , University of Munich (LMU) , Butenandtstr. 5-13 , D-81377 München , Germany.

Laurens D M Peters (LDM)

Chair of Theoretical Chemistry, Department of Chemistry , University of Munich (LMU) , Butenandtstr. 7 , D-81377 München , Germany.
Center for Integrated Protein Science (CIPSM) at the Department of Chemistry , University of Munich (LMU) , Butenandtstr. 5-13 , D-81377 München , Germany.

Jörg Kussmann (J)

Chair of Theoretical Chemistry, Department of Chemistry , University of Munich (LMU) , Butenandtstr. 7 , D-81377 München , Germany.
Center for Integrated Protein Science (CIPSM) at the Department of Chemistry , University of Munich (LMU) , Butenandtstr. 5-13 , D-81377 München , Germany.

Christian Ochsenfeld (C)

Chair of Theoretical Chemistry, Department of Chemistry , University of Munich (LMU) , Butenandtstr. 7 , D-81377 München , Germany.
Center for Integrated Protein Science (CIPSM) at the Department of Chemistry , University of Munich (LMU) , Butenandtstr. 5-13 , D-81377 München , Germany.

Classifications MeSH