Choosing your (Friedel) mates wisely: grouping data sets to improve anomalous signal.


Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Feb 2019
Historique:
received: 07 05 2018
accepted: 06 11 2018
entrez: 2 3 2019
pubmed: 2 3 2019
medline: 14 6 2019
Statut: ppublish

Résumé

Single-wavelength anomalous diffraction (SAD) phasing from multiple crystals can be especially challenging in samples with weak anomalous signals and/or strong non-isomorphism. Here, advantage is taken of the combinatorial diversity possible in such experiments to study the relationship between merging statistics and downstream metrics of phasing signals. It is furthermore shown that a genetic algorithm (GA) can be used to optimize the grouping of data sets to enhance weak anomalous signals based on these merging statistics.

Identifiants

pubmed: 30821708
pii: S205979831801570X
doi: 10.1107/S205979831801570X
pmc: PMC6400255
doi:

Substances chimiques

Bacterial Proteins 0
Thermolysin EC 3.4.24.27
Urease EC 3.5.1.5

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

200-210

Informations de copyright

open access.

Références

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Auteurs

Nicolas Foos (N)

Structural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, F-38000 Grenoble, France.

Michele Cianci (M)

Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy.

Max H Nanao (MH)

Structural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, F-38000 Grenoble, France.

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Classifications MeSH