Making the Best of a Bad Situation: A Multiscale Approach to Free Energy Calculation.
Journal
Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704
Informations de publication
Date de publication:
09 Apr 2019
09 Apr 2019
Historique:
pubmed:
2
3
2019
medline:
2
3
2019
entrez:
2
3
2019
Statut:
ppublish
Résumé
Many enhanced sampling techniques rely on the identification of a number of collective variables that describe all the slow modes of the system. By constructing a bias potential in this reduced space, one is then able to sample efficiently and reconstruct the free energy landscape. In methods such as metadynamics, the quality of these collective variables plays a key role in convergence efficiency. Unfortunately in many systems of interest it is not possible to identify an optimal collective variable, and one must deal with the nonideal situation of a system in which some slow modes are not accelerated. We propose a two-step approach in which, by taking into account the residual multiscale nature of the problem, one is able to significantly speed up convergence. To do so, we combine an exploratory metadynamics run with an optimization of the free energy difference between metastable states, based on the recently proposed variationally enhanced sampling method. This new method is well parallelizable and is especially suited for complex systems, because of its simplicity and clear underlying physical picture.
Identifiants
pubmed: 30822383
doi: 10.1021/acs.jctc.9b00032
doi:
Types de publication
Journal Article
Langues
eng