Reference DNA barcodes and other mitochondrial markers for identifying Caribbean Octocorals.
16S
Bocas del Toro
DNA barcoding
Panama
cytochrome oxidase I
gorgonian
Journal
Biodiversity data journal
ISSN: 1314-2828
Titre abrégé: Biodivers Data J
Pays: Bulgaria
ID NLM: 101619899
Informations de publication
Date de publication:
2019
2019
Historique:
received:
31
10
2018
accepted:
04
02
2019
entrez:
5
3
2019
pubmed:
5
3
2019
medline:
5
3
2019
Statut:
epublish
Résumé
DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identification within some "basal" phyla of metazoans. Nevertheless metabarcoding studies of bulk mixed samples commonly use these markers and may obtain sequences for "basal" phyla. We sequenced mitochondrial DNA fragments of cytochrome oxidase c subunit I (COI), 16S ribosomal RNA (16S), NADH dehydrogenase subunits 2 (16S-ND2), 6 (ND6-ND3) and 4L (ND4L-MSH) for 27 species of Caribbean octocorals to create a reference barcode dataset and to compare the utility of COI and 16S to other markers more typically used for octocorals. The most common genera (
Identifiants
pubmed: 30828253
doi: 10.3897/BDJ.7.e30970
pii: Biodiversity Data Journal
pmc: PMC6393399
doi:
Types de publication
Journal Article
Langues
eng
Pagination
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