Net-FLICS: fast quantitative wide-field fluorescence lifetime imaging with compressed sensing - a deep learning approach.


Journal

Light, science & applications
ISSN: 2047-7538
Titre abrégé: Light Sci Appl
Pays: England
ID NLM: 101610753

Informations de publication

Date de publication:
2019
Historique:
received: 04 10 2018
revised: 06 02 2019
accepted: 13 02 2019
entrez: 12 3 2019
pubmed: 12 3 2019
medline: 12 3 2019
Statut: epublish

Résumé

Macroscopic fluorescence lifetime imaging (MFLI) via compressed sensed (CS) measurements enables efficient and accurate quantification of molecular interactions in vivo over a large field of view (FOV). However, the current data-processing workflow is slow, complex and performs poorly under photon-starved conditions. In this paper, we propose Net-FLICS, a novel image reconstruction method based on a convolutional neural network (CNN), to directly reconstruct the intensity and lifetime images from raw time-resolved CS data. By carefully designing a large simulated dataset, Net-FLICS is successfully trained and achieves outstanding reconstruction performance on both in vitro and in vivo experimental data and even superior results at low photon count levels for lifetime quantification.

Identifiants

pubmed: 30854198
doi: 10.1038/s41377-019-0138-x
pii: 138
pmc: PMC6400960
doi:

Types de publication

Journal Article

Langues

eng

Pagination

26

Subventions

Organisme : NCI NIH HHS
ID : R01 CA207725
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB019443
Pays : United States

Déclaration de conflit d'intérêts

The authors declare that they have no conflict of interest.

Références

Ann Biomed Eng. 2012 Feb;40(2):304-31
pubmed: 22273730
Nature. 2015 May 28;521(7553):436-44
pubmed: 26017442
Sci Rep. 2016 Mar 15;6:21471
pubmed: 26975219
Nat Photonics. 2017;11:411-414
pubmed: 29242714
IEEE Trans Med Imaging. 2018 Jun;37(6):1348-1357
pubmed: 29870364
Opt Lett. 2018 Sep 15;43(18):4370-4373
pubmed: 30211866

Auteurs

Ruoyang Yao (R)

Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180 USA.

Marien Ochoa (M)

Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180 USA.

Pingkun Yan (P)

Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180 USA.

Xavier Intes (X)

Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180 USA.

Classifications MeSH