MXCuBE2: the dawn of MXCuBE Collaboration.
MXCuBE
graphical user interface
macromolecular crystallography
software collaboration
synchrotron beamline control software
Journal
Journal of synchrotron radiation
ISSN: 1600-5775
Titre abrégé: J Synchrotron Radiat
Pays: United States
ID NLM: 9888878
Informations de publication
Date de publication:
01 Mar 2019
01 Mar 2019
Historique:
received:
21
09
2018
accepted:
23
01
2019
entrez:
12
3
2019
pubmed:
12
3
2019
medline:
12
3
2019
Statut:
ppublish
Résumé
MXCuBE2 is the second-generation evolution of the MXCuBE beamline control software, initially developed and used at ESRF - the European Synchrotron. MXCuBE2 extends, in an intuitive graphical user interface (GUI), the functionalities and data collection methods available to users while keeping all previously available features and allowing for the straightforward incorporation of ongoing and future developments. MXCuBE2 introduces an extended abstraction layer that allows easy interfacing of any kind of macromolecular crystallography (MX) hardware component, whether this is a diffractometer, sample changer, detector or optical element. MXCuBE2 also works in strong synergy with the ISPyB Laboratory Information Management System, accessing the list of samples available for a particular experimental session and associating, either from instructions contained in ISPyB or from user input via the MXCuBE2 GUI, different data collection types to them. The development of MXCuBE2 forms the core of a fruitful collaboration which brings together several European synchrotrons and a software development factory and, as such, defines a new paradigm for the development of beamline control platforms for the European MX user community.
Identifiants
pubmed: 30855248
pii: S1600577519001267
doi: 10.1107/S1600577519001267
pmc: PMC6412183
doi:
Types de publication
Journal Article
Langues
eng
Pagination
393-405Subventions
Organisme : Sixth Framework Programme
ID : LHSG-CT-2003-503420
Organisme : Horizon 2020 programme of the European Union and by Vetenskapsrådet
ID : 653706
Informations de copyright
open access.
Références
Prog Biophys Mol Biol. 2005 Oct;89(2):124-52
pubmed: 15910915
J Synchrotron Radiat. 2006 May;13(Pt 3):227-38
pubmed: 16645249
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Nat Methods. 2009 Sep;6(9):651-3
pubmed: 19684596
J Synchrotron Radiat. 2009 Nov;16(Pt 6):872-9
pubmed: 19844027
J Synchrotron Radiat. 2010 Jan;17(1):107-18
pubmed: 20029119
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):381-8
pubmed: 20382991
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):409-19
pubmed: 20382994
J Appl Crystallogr. 2010 Jun 1;43(Pt 3):611-616
pubmed: 20502598
J Synchrotron Radiat. 2010 Sep;17(5):700-7
pubmed: 20724792
Nature. 2011 Feb 3;470(7332):73-7
pubmed: 21293373
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):293-302
pubmed: 21460447
Bioinformatics. 2011 Nov 15;27(22):3186-92
pubmed: 21949273
J Synchrotron Radiat. 2012 May;19(Pt 3):442-9
pubmed: 22514183
J Synchrotron Radiat. 2012 May;19(Pt 3):455-61
pubmed: 22514185
Science. 2012 May 25;336(6084):1033-7
pubmed: 22628655
Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):975-84
pubmed: 22868763
Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1393-9
pubmed: 22993093
J Appl Crystallogr. 2013 Jun 1;46(Pt 3):804-810
pubmed: 23682196
Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1241-51
pubmed: 23793150
J Synchrotron Radiat. 2014 Jul;21(Pt 4):679-89
pubmed: 24971961
IUCrJ. 2014 Feb 10;1(Pt 2):87-94
pubmed: 25075324
Nat Methods. 2015 Feb;12(2):131-3
pubmed: 25506719
Acta Crystallogr D Biol Crystallogr. 2015 Jul;71(Pt 7):1433-43
pubmed: 26143915
Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1757-67
pubmed: 26249356
J Synchrotron Radiat. 2015 Nov;22(6):1540-7
pubmed: 26524320
Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2328-43
pubmed: 26527148
Acta Crystallogr D Struct Biol. 2016 Mar;72(Pt 3):413-20
pubmed: 26960128
Acta Crystallogr F Struct Biol Commun. 2016 May;72(Pt 5):346-55
pubmed: 27139825
IUCrJ. 2017 Feb 23;4(Pt 2):100-101
pubmed: 28250945
IUCrJ. 2017 Sep 01;4(Pt 5):516-517
pubmed: 28989708
J Synchrotron Radiat. 2018 Jul 1;25(Pt 4):1249-1260
pubmed: 29979188