Differential Gene Expression Supports a Resource-Intensive, Defensive Role for Colony Production in the Bloom-Forming Haptophyte, Phaeocystis globosa.

Algae bloom RNA-seq algal bloom colonial morphotype dimethylsulfide dimethylsulfoniopropionate phytoplankton plankton transcriptome transcriptomics

Journal

The Journal of eukaryotic microbiology
ISSN: 1550-7408
Titre abrégé: J Eukaryot Microbiol
Pays: United States
ID NLM: 9306405

Informations de publication

Date de publication:
09 2019
Historique:
received: 06 11 2018
revised: 23 01 2019
accepted: 28 02 2019
pubmed: 13 3 2019
medline: 17 6 2020
entrez: 13 3 2019
Statut: ppublish

Résumé

Phaeocystis globosa forms dense, monospecific blooms in temperate, northern waters. Blooms are usually dominated by the colonial morphotype-nonflagellated cells embedded in a secreted mucilaginous mass. Colonial Phaeocystis blooms significantly affect food-web structure and function and negatively impact fisheries and aquaculture, but factors regulating colony formation remain enigmatic. Destructive P. globosa blooms have been reported in tropical and subtropical regions more recently and warm-water blooms could become more common with continued climate change and coastal eutrophication. We therefore assessed genetic pathways associated with colony formation by investigating differential gene expression between colonial and solitary cells of a warm-water P. globosa strain. Our results illustrate a transcriptional shift in colonial cells with most of the differentially expressed genes downregulated, supporting a reallocation of resources associated with forming and maintaining colonies. Dimethylsulfide and acrylate production and pathogen interaction pathways were upregulated in colonial cells, suggesting a defensive role for producing colonies. We identify several protein kinase signaling pathways that may influence the transition between morphotypes, providing targets for future research into factors affecting colony formation. This study provides novel insights into genetic mechanisms involved in Phaeocystis colony formation and provides new evidence supporting a defensive role for Phaeocystis colonies.

Identifiants

pubmed: 30860641
doi: 10.1111/jeu.12727
pmc: PMC6766888
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

788-801

Informations de copyright

© 2019 The Authors. Journal of Eukaryotic Microbiology published by Wiley Periodicals, Inc. on behalf of International Society of Protistologists.

Références

J Bacteriol. 1999 Mar;181(6):1875-82
pubmed: 10074082
J Appl Physiol (1985). 2001 Sep;91(3):1421-30
pubmed: 11509544
Nature. 2002 Jul 18;418(6895):317-20
pubmed: 12124622
Clin Chem. 2004 Aug;50(8):1464-71
pubmed: 15155546
Plant Cell Physiol. 2004 May;45(5):535-42
pubmed: 15169935
Biochim Biophys Acta. 2004 Jul 5;1692(2-3):103-19
pubmed: 15246682
Bioinformatics. 2007 Jan 15;23(2):257-8
pubmed: 17098774
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10512-7
pubmed: 17563379
Mar Pollut Bull. 2009 Jan;58(1):55-63
pubmed: 18947841
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2176-9
pubmed: 19605732
PLoS Comput Biol. 2009 Jul;5(7):e1000443
pubmed: 19649320
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Plant Signal Behav. 2010 Nov;5(11):1370-8
pubmed: 20980831
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
PLoS One. 2011;6(7):e21800
pubmed: 21789182
BMC Bioinformatics. 2011 Aug 04;12:323
pubmed: 21816040
PLoS Comput Biol. 2011 Oct;7(10):e1002195
pubmed: 22039361
OMICS. 2012 May;16(5):284-7
pubmed: 22455463
Bioinformatics. 2012 Dec 1;28(23):3150-2
pubmed: 23060610
Biochim Biophys Acta. 2013 Jul;1833(7):1766-71
pubmed: 23380707
PLoS One. 2013 Apr 09;8(4):e60826
pubmed: 23585853
Nature. 2013 Jul 11;499(7457):209-13
pubmed: 23760476
Nat Protoc. 2013 Aug;8(8):1494-512
pubmed: 23845962
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
PLoS Biol. 2014 Jun 24;12(6):e1001889
pubmed: 24959919
PLoS One. 2014 Jul 01;9(7):e101418
pubmed: 24983246
Nucleic Acids Res. 2015 Jan;43(Database issue):D213-21
pubmed: 25428371
Genome Biol. 2014;15(12):550
pubmed: 25516281
Ecotoxicology. 2015 Oct;24(7-8):1419-29
pubmed: 25967937
Nature. 2015 Jun 4;522(7554):98-101
pubmed: 26017307
Sci Rep. 2015 Jun 04;5:10850
pubmed: 26040243
Bioinformatics. 2015 Oct 1;31(19):3210-2
pubmed: 26059717
Science. 2015 Jun 26;348(6242):1466-9
pubmed: 26113722
J Mol Biol. 2016 Feb 22;428(4):726-731
pubmed: 26585406
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85
pubmed: 26673716
J Phycol. 2012 Jun;48(3):514-7
pubmed: 27011066
Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7894-9
pubmed: 27354530
Nat Rev Microbiol. 2017 Jan;15(1):6-20
pubmed: 27867198
Cell. 2017 Sep 7;170(6):1175-1183.e11
pubmed: 28867285
Sci Rep. 2017 Sep 15;7(1):11701
pubmed: 28916825
Sci Rep. 2018 Jan 22;8(1):1362
pubmed: 29358745
Nat Microbiol. 2018 Apr;3(4):430-439
pubmed: 29483657
Nature. 1993 Oct 28;365(6449):855-9
pubmed: 8413673

Auteurs

Margaret Mars Brisbin (M)

Marine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Onna-Son, Japan.

Satoshi Mitarai (S)

Marine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Onna-Son, Japan.

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