Antibody responses to viral infections: a structural perspective across three different enveloped viruses.


Journal

Nature microbiology
ISSN: 2058-5276
Titre abrégé: Nat Microbiol
Pays: England
ID NLM: 101674869

Informations de publication

Date de publication:
05 2019
Historique:
received: 08 08 2018
accepted: 29 01 2019
pubmed: 20 3 2019
medline: 27 6 2019
entrez: 20 3 2019
Statut: ppublish

Résumé

Antibodies serve as critical barriers to viral infection. Humoral immunity to a virus is achieved through the dual role of antibodies in communicating the presence of invading pathogens in infected cells to effector cells, and in interfering with processes essential to the viral life cycle (chiefly entry into the host cell). For individuals that successfully control infection, virus-elicited antibodies can provide lifelong surveillance and protection from future insults. One approach to understand the nature of a successful immune response has been to utilize structural biology to uncover the molecular details of antibodies derived from vaccines or natural infection and how they interact with their cognate microbial antigens. The ability to isolate antigen-specific B-cells and rapidly solve structures of functional, monoclonal antibodies in complex with viral glycoprotein surface antigens has greatly expanded our knowledge of the sites of vulnerability on viruses. In this Review, we compare the adaptive humoral immune responses to human immunodeficiency virus (HIV), influenza and filoviruses, with a particular focus on neutralizing antibodies. The pathogenesis of each of these viruses is quite different, providing an opportunity for comparison of immune responses: HIV causes a persistent, chronic infection; influenza, an acute infection with multiple exposures during a lifetime and annual vaccination; filoviruses, a virulent, acute infection. Neutralizing antibodies that develop under these different constraints are therefore sentinels that can provide insight into the underlying humoral immune responses, as well as important lessons to guide future development of vaccines and immunotherapeutics.

Identifiants

pubmed: 30886356
doi: 10.1038/s41564-019-0392-y
pii: 10.1038/s41564-019-0392-y
pmc: PMC6818971
mid: NIHMS1055166
doi:

Substances chimiques

Antibodies, Viral 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

734-747

Subventions

Organisme : NIAID NIH HHS
ID : R56 AI127371
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI109762
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI100663
Pays : United States

Références

White, J. M. & Whittaker, G. R. Fusion of enveloped viruses in endosomes. Traffic 17, 593–614 (2016).
pubmed: 26935856 pmcid: 4866878
Harrison, S. C. Viral membrane fusion. Virology 479–480, 498–507 (2015).
pubmed: 25866377
Harris, L. J., Larson, S. B., Hasel, K. W. & McPherson, A. Refined structure of an intact IgG2a monoclonal antibody. Biochemistry 36, 1581–1597 (1997).
pubmed: 9048542
Harris, L. J., Skaletsky, E. & McPherson, A. Crystallographic structure of an intact IgG1 monoclonal antibody. J. Mol. Biol. 275, 861–872 (1998).
pubmed: 9480774
Saphire, E. O. et al. Crystal structure of a neutralizing human IGG against HIV-1: a template for vaccine design. Science 293, 1155–1159 (2001).
pubmed: 11498595
Scapin, G. et al. Structure of full-length human anti-PD1 therapeutic IgG4 antibody pembrolizumab. Nat. Struct. Mol. Biol. 22, 953–958 (2015).
pubmed: 26595420
Stanfield, R. L. & Wilson, I. A. Antibody Structure. Microbiol. Spectr. 2, AID-0012-2013 (2014).
Wilson, I. A. & Stanfield, R. L. Antibody-antigen interactions: new structures and new conformational changes. Curr. Opin. Struct. Biol. 4, 857–867 (1994).
pubmed: 7536111
Bullough, P. A., Hughson, F. M., Skehel, J. J. & Wiley, D. C. Structure of influenza haemagglutinin at the pH of membrane fusion. Nature 371, 37–43 (1994).
pubmed: 8072525
Wilson, I. A., Skehel, J. J. & Wiley, D. C. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution. Nature 289, 366–373 (1981).
pubmed: 7464906
Julien, J. P. et al. Crystal structure of a soluble cleaved HIV-1 envelope trimer. Science 342, 1477–1483 (2013).
Lyumkis, D. et al. Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer. Science 342, 1484–1490 (2013).
pubmed: 3954647 pmcid: 3954647
Chan, D. C., Fass, D., Berger, J. M. & Kim, P. S. Core structure of gp41 from the HIV envelope glycoprotein. Cell 89, 263–273 (1997).
pubmed: 9108481
Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J. & Wiley, D. C. Atomic structure of the ectodomain from HIV-1 gp41. Nature 387, 426–430 (1997).
pubmed: 9163431
Lee, J. E. et al. Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor. Nature 454, 177–182 (2008).
pubmed: 18615077 pmcid: 2700032
Weissenhorn, W., Carfi, A., Lee, K. H., Skehel, J. J. & Wiley, D. C. Crystal structure of the Ebola virus membrane fusion subunit, GP2, from the envelope glycoprotein ectodomain. Mol. Cell 2, 605–616 (1998).
pubmed: 9844633
Cook, J. D. & Lee, J. E. The secret life of viral entry glycoproteins: moonlighting in immune evasion. PLoS Pathog. 9, e1003258 (2013).
pubmed: 3656028 pmcid: 3656028
Tate, M. D. et al. Playing hide and seek: how glycosylation of the influenza virus hemagglutinin can modulate the immune response to infection. Viruses 6, 1294–1316 (2014).
pubmed: 24638204 pmcid: 3970151
Wu, N. C. & Wilson, I. A. A Perspective on the structural and functional constraints for immune evasion: insights from influenza virus. J. Mol. Biol. 429, 2694–2709 (2017).
pubmed: 28648617 pmcid: 5573227
Crispin, M., Ward, A. B. & Wilson, I. A. Structure and immune recognition of the HIV glycan shield. Ann. Rev. Biophys. 47, 499–523 (2018).
Cao, L. et al. Global site-specific N-glycosylation analysis of HIV envelope glycoprotein. Nat. Commun. 8, 14954 (2017).
pubmed: 28348411 pmcid: 5379070
Lee, J. H., de Val, N., Lyumkis, D. & Ward, A. B. Model building and refinement of a natively glycosylated HIV-1 Env protein by high-resolution cryoelectron microscopy. Structure 23, 1943–1951 (2015).
pubmed: 26388028 pmcid: 4618500
Ekiert, D. C. et al. Antibody recognition of a highly conserved influenza virus epitope. Science 324, 246–251 (2009).
pubmed: 2758658 pmcid: 2758658
Flyak, A. I. et al. Mechanism of human antibody-mediated neutralization of Marburg virus. Cell 160, 893–903 (2015).
pubmed: 25723164 pmcid: 4344968
Julien, J. P. et al. Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9. Proc. Natl Acad. Sci. USA 110, 4351–4356 (2013).
pubmed: 23426631
Kong, L. et al. Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120. Nat. Struct. Mol. Biol. 20, 796–803 (2013).
pubmed: 23708606 pmcid: 3823233
Murin, C. D. et al. Structure of 2G12 Fab2 in complex with soluble and fully glycosylated HIV-1 Env by negative-stain single-particle electron microscopy. J. Virol. 88, 10177–10188 (2014).
pubmed: 24965454 pmcid: 4136306
Williams, K. L. et al. Superinfection drives HIV neutralizing antibody responses from several B cell lineages that contribute to a polyclonal repertoire. Cell Rep. 23, 682–691 (2018).
pubmed: 29669274 pmcid: 5990032
Bianchi, M. et al. Electron-microscopy-based epitope mapping defines specificities of polyclonal antibodies elicited during HIV-1 BG505 envelope trimer immunization. Immunity 49, 288–300 (2018).
pubmed: 30097292 pmcid: 6104742
Ozorowski, G. et al. Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike. Nature 547, 360–363 (2017).
pubmed: 5538736 pmcid: 5538736
Georgiev, I. S., Gordon Joyce, M., Zhou, T. & Kwong, P. D. Elicitation of HIV-1-neutralizing antibodies against the CD4-binding site. Curr. Opin. HIV AIDS 8, 382–392 (2013).
pubmed: 23924998 pmcid: 4154626
Zhou, T. et al. Structural Repertoire of HIV-1-neutralizing antibodies targeting the CD4 supersite in 14 donors. Cell 161, 1280–1292 (2015).
pubmed: 26004070 pmcid: 4683157
Xu, R. et al. A recurring motif for antibody recognition of the receptor-binding site of influenza hemagglutinin. Nat. Struct. Mol. Biol. 20, 363–370 (2013).
pubmed: 23396351 pmcid: 3594569
Garcia-Sastre, A. Influenza virus receptor specificity: disease and transmission. Am. J. Pathol. 176, 1584–1585 (2010).
pubmed: 20203283 pmcid: 2843447
Stevens, J. et al. Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science 312, 404–410 (2006).
pubmed: 16543414
Wu, N. C. et al. A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site. Nat. Commun. 9, 1264 (2018).
pubmed: 29593268 pmcid: 5871881
Wu, N. C. et al. Diversity of functionally permissive sequences in the receptor-binding site of influenza hemagglutinin. Cell Host Microbe 22, 247–248 (2017).
pubmed: 28799910 pmcid: 5652301
Lee, P. S. et al. Receptor mimicry by antibody F045–092 facilitates universal binding to the H3 subtype of influenza virus. Nat. Commun. 5, 3614 (2014).
pubmed: 24717798 pmcid: 4358779
Wu, N. C. et al. In vitro evolution of an influenza broadly neutralizing antibody is modulated by hemagglutinin receptor specificity. Nat. Commun. 8, 15371 (2017).
pubmed: 28504265 pmcid: 5440694
Julien, J. P., Lee, P. S. & Wilson, I. A. Structural insights into key sites of vulnerability on HIV-1 Env and influenza HA. Immunol. Rev. 250, 180–198 (2012).
pubmed: 23046130 pmcid: 3479221
Laursen, N. S. & Wilson, I. A. Broadly neutralizing antibodies against influenza viruses. Antivir. Res. 98, 476–483 (2013).
pubmed: 23583287
Lee, P. S. & Wilson, I. A. Structural characterization of viral epitopes recognized by broadly cross-reactive antibodies. Curr. Top. Microbiol. 386, 323–341 (2015).
Bornholdt, Z. A. et al. Host-primed Ebola virus GP exposes a hydrophobic NPC1 receptor-binding pocket, revealing a target for broadly neutralizing antibodies. mBio 7, e02154–15 (2016).
pubmed: 26908579 pmcid: 4791852
Chandran, K., Sullivan, N. J., Felbor, U., Whelan, S. P. & Cunningham, J. M. Endosomal proteolysis of the Ebola virus glycoprotein is necessary for infection. Science 308, 1643–1645 (2005).
pubmed: 15831716 pmcid: 4797943
Miller, E. H. et al. Ebola virus entry requires the host-programmed recognition of an intracellular receptor. EMBO J. 31, 1947–1960 (2012).
pubmed: 22395071 pmcid: 3343336
Gnirss, K. et al. Cathepsins B and L activate Ebola but not Marburg virus glycoproteins for efficient entry into cell lines and macrophages independent of TMPRSS2 expression. Virology 424, 3–10 (2012).
pubmed: 22222211
King, L. B. et al. The Marburgvirus-neutralizing human monoclonal antibody MR191 targets a conserved site to block virus receptor binding. Cell Host Microbe 23, 101–109 (2018).
pubmed: 29324225 pmcid: 5772738
Hashiguchi, T. et al. Structural basis for Marburg virus neutralization by a cross-reactive human antibody. Cell 160, 904–912 (2015).
pubmed: 25723165 pmcid: 4344967
Wang, H. et al. Ebola viral glycoprotein bound to its endosomal receptor niemann-pick C1. Cell 164, 258–268 (2016).
pubmed: 26771495
Lin, Y. P. et al. Evolution of the receptor binding properties of the influenza A(H3N2) hemagglutinin. Proc. Natl Acad. Sci. USA 109, 21474–21479 (2012).
pubmed: 23236176
Ekiert, D. C. et al. Cross-neutralization of influenza A viruses mediated by a single antibody loop. Nature 489, 526–532 (2012).
pubmed: 22982990 pmcid: 3538848
Lee, P. S. et al. Heterosubtypic antibody recognition of the influenza virus hemagglutinin receptor binding site enhanced by avidity. Proc. Natl Acad. Sci. USA 109, 17040–17045 (2012).
pubmed: 23027945
Whittle, J. R. et al. Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin. Proc. Natl Acad. Sci. USA 108, 14216–14221 (2011).
pubmed: 21825125
Schmidt, A. G. et al. Viral receptor-binding site antibodies with diverse germline origins. Cell 161, 1026–1034 (2015).
pubmed: 4441819 pmcid: 4441819
Kwong, P. D. et al. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393, 648–659 (1998).
pubmed: 5629912 pmcid: 5629912
Garrett, T. P., Wang, J., Yan, Y., Liu, J. & Harrison, S. C. Refinement and analysis of the structure of the first two domains of human CD4. J. Mol. Biol. 234, 763–778 (1993).
pubmed: 8254672
Wu, X. et al. Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science 329, 856–861 (2010).
pubmed: 20616233 pmcid: 20616233
Zhou, T. et al. Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science 329, 811–817 (2010).
pubmed: 2981354 pmcid: 2981354
Zhou, T. et al. Structural definition of a conserved neutralization epitope on HIV-1 gp120. Nature 445, 732–737 (2007).
pubmed: 17301785 pmcid: 2584968
Bale, S. et al. Structural basis for differential neutralization of ebolaviruses. Viruses 4, 447–470 (2012).
pubmed: 22590681 pmcid: 3347318
Dias, J. M. et al. A shared structural solution for neutralizing ebolaviruses. Nat. Struct. Mol. Biol. 18, 1424–1427 (2011).
pubmed: 22101933 pmcid: 3230659
Lee, J. E. & Saphire, E. O. Ebolavirus glycoprotein structure and mechanism of entry. Future Virol. 4, 621–635 (2009).
pubmed: 20198110 pmcid: 2829775
Crowe, J. E. Jr. Principles of broad and potent antiviral human antibodies: insights for vaccine design. Cell Host Microbe 22, 193–206 (2017).
pubmed: 28799905 pmcid: 5700460
Hashem, A. M. et al. Universal antibodies against the highly conserved influenza fusion peptide cross-neutralize several subtypes of influenza A virus. Biochem. Bioph. Res. Co. 403, 247–251 (2010).
Murin, C. D., Bruhn, J. F., Bornholdt, Z. A., Copps, J., Stanfield, R. & Ward, A. B. Structural basis of pan-ebolavirus neutralization by an antibody targeting the glycoprotein fusion loop. Cell Rep. 24, 2723–2732 (2018).
pubmed: 30184505 pmcid: 6174886
van Gils, M. J. et al. An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability. Nat. Microbiol. 2, 16199 (2016).
pubmed: 27841852 pmcid: 5372380
Kong, R. et al. Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody. Science 352, 828–833 (2016).
pubmed: 27174988 pmcid: 4917739
Xu, K. et al. Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1. Nat. Med. 24, 857–867 (2018).
pubmed: 29867235 pmcid: 6358635
Kallewaard, N. L. et al. Structure and function analysis of an antibody recognizing all Influenza A subtypes. Cell 166, 596–608 (2016).
pubmed: 27453466 pmcid: 4967455
Prabhu, N. et al. Monoclonal antibodies against the fusion peptide of hemagglutinin protect mice from lethal influenza A virus H5N1 infection. J. Virol. 83, 2553–2562 (2009).
pubmed: 19109379
Zhao, X. et al. Immunization-elicited broadly protective antibody reveals Ebolavirus fusion loop as a site of vulnerability. Cell 169, 891–904 (2017).
pubmed: 28525756 pmcid: 5803079
Furuyama, W. et al. Discovery of an antibody for pan-ebolavirus therapy. Sci. Rep. 6, 20514 (2016).
pubmed: 26861827 pmcid: 4748290
Wec, A. Z. et al. Antibodies from a human survivor define sites of vulnerability for broad protection against Ebolaviruses. Cell 169, 878–890 (2017).
pubmed: 28525755 pmcid: 5808922
Zhu, P. et al. Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions. Proc. Natl Acad. Sci. USA 100, 15812–15817 (2003).
pubmed: 14668432
Zhu, P. et al. Distribution and three-dimensional structure of AIDS virus envelope spikes. Nature 441, 847–852 (2006).
pubmed: 16728975
Lee, J. H., Ozorowski, G. & Ward, A. B. Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer. Science 351, 1043–1048 (2016).
pubmed: 5001164 pmcid: 5001164
Huang, J. et al. Broad and potent neutralization of HIV-1 by a gp41-specific human antibody. Nature 491, 406–412 (2012).
pubmed: 23151583 pmcid: 23151583
Cardoso, R. M. et al. Broadly neutralizing anti-HIV antibody 4E10 recognizes a helical conformation of a highly conserved fusion-associated motif in gp41. Immunity 22, 163–173 (2005).
pubmed: 15723805
Flyak, A. I. et al. Broadly neutralizing antibodies from human survivors target a conserved site in the Ebola virus glycoprotein HR2-MPER region. Nat. Microbiol. 3, 670–677 (2018).
pubmed: 29736037 pmcid: 6030461
Krammer, F. & Palese, P. Influenza virus hemagglutinin stalk-based antibodies and vaccines. Curr. Opin. Virol. 3, 521–530 (2013).
pubmed: 23978327 pmcid: 3804342
Dreyfus, C., Ekiert, D. C. & Wilson, I. A. Structure of a classical broadly neutralizing stem antibody in complex with a pandemic H2 influenza virus hemagglutinin. J. Virol. 87, 7149–7154 (2013).
pubmed: 23552413 pmcid: 3676097
Khanna, M., Sharma, S., Kumar, B. & Rajput, R. Protective immunity based on the conserved hemagglutinin stalk domain and its prospects for universal influenza vaccine development. Biomed. Res. Int. 2014, 546274 (2014).
pubmed: 24982895 pmcid: 4055638
Erbelding, E. J. et al. A universal Influenza vaccine: the strategic plan for the National Institute of Allergy and Infectious Diseases. J. Infect. Dis. 218, 347–354 (2018).
pubmed: 29506129 pmcid: 6279170
Impagliazzo, A. et al. A stable trimeric influenza hemagglutinin stem as a broadly protective immunogen. Science 349, 1301–1306 (2015).
pubmed: 26303961
Krammer, F., Garcia-Sastre, A. & Palese, P. Is it possible to develop a “universal” influenza virus vaccine? Potential target antigens and critical aspects for a universal influenza vaccine. Cold Spring Harb. Perspect. Biol. https://doi.org/10.1101/cshperspect.a028845 (2018).
doi: 10.1101/cshperspect.a028845 pubmed: 28663209
Krammer, F., Pica, N., Hai, R., Margine, I. & Palese, P. Chimeric hemagglutinin influenza virus vaccine constructs elicit broadly protective stalk-specific antibodies. J. Virol. 87, 6542–6550 (2013).
pubmed: 23576508 pmcid: 3676110
Nachbagauer, R. et al. A universal influenza virus vaccine candidate confers protection against pandemic H1N1 infection in preclinical ferret studies. NPJ Vaccines 2, 26 (2017).
pubmed: 29263881 pmcid: 5627297
Yassine, H. M. et al. Hemagglutinin-stem nanoparticles generate heterosubtypic influenza protection. Nat. Med. 21, 1065–1070 (2015).
pubmed: 26301691
Irimia, A. et al. Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. 13, e1006212 (2017).
pubmed: 28225819 pmcid: 5338832
Irimia, A., Sarkar, A., Stanfield, R. L. & Wilson, I. A. Crystallographic identification of lipid as an integral component of the epitope of HIV broadly neutralizing antibody 4E10. Immunity 44, 21–31 (2016).
pubmed: 26777395 pmcid: 4720917
Friesen, R. H. et al. A common solution to group 2 influenza virus neutralization. Proc. Natl Acad. Sci. USA 111, 445–450 (2014).
pubmed: 24335589
Burton, D. R. Antibodies, viruses and vaccines. Nat. Rev. Immunol. 2, 706–713 (2002).
pubmed: 12209139
Burton, D. R. & Mascola, J. R. Antibody responses to envelope glycoproteins in HIV-1 infection. Nat. Immunol. 16, 571–576 (2015).
pubmed: 25988889 pmcid: 4834917
Burton, D. R., Poignard, P., Stanfield, R. L. & Wilson, I. A. Broadly neutralizing antibodies present new prospects to counter highly antigenically diverse viruses. Science 337, 183–186 (2012).
pubmed: 22798606 pmcid: 3600854
Burton, D. R., Stanfield, R. L. & Wilson, I. A. Antibody vs. HIV in a clash of evolutionary titans. Proc. Natl Acad. Sci. USA 102, 14943–14948 (2005).
pubmed: 16219699
Caskey, M., Klein, F. & Nussenzweig, M. C. Broadly neutralizing antibodies for HIV-1 prevention or immunotherapy. N. Engl. J. Med. 375, 2019–2021 (2016).
pubmed: 27959740
Mouquet, H. et al. Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies. Proc. Natl Acad. Sci. USA 109, E3268–3277 (2012).
McLellan, J. S. et al. Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature 480, 336–343 (2011).
pubmed: 22113616 pmcid: 3406929
Julien, J. P. et al. Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans. PLoS Pathog. 9, e1003342 (2013).
pubmed: 23658524 pmcid: 3642082
Pejchal, R. et al. A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield. Science 334, 1097–1103 (2011).
pubmed: 21998254 pmcid: 3280215
Calarese, D. A. et al. Antibody domain exchange is an immunological solution to carbohydrate cluster recognition. Science 300, 2065–2071 (2003).
pubmed: 12829775
Stanfield, R. L., De Castro, C., Marzaioli, A. M., Wilson, I. A. & Pantophlet, R. Crystal structure of the HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomannose. Glycobiology 25, 412–419 (2015).
pubmed: 25380763
Kwong, P. D. et al. HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites. Nature 420, 678–682 (2002).
pubmed: 12478295
Lee, J. H. et al. A broadly neutralizing antibody targets the dynamic HIV envelope trimer apex via a long, rigidified, and anionic beta-hairpin structure. Immunity 46, 690–702 (2017).
pubmed: 28423342 pmcid: 5400778
Cale, E. M. et al. Virus-like particles identify an HIV V1V2 apex-binding neutralizing antibody that lacks a protruding loop. Immunity 46, 777–791 (2017).
pubmed: 28514685 pmcid: 5512451
Wang, H. et al. Asymmetric recognition of HIV-1 envelope trimer by V1V2 loop-targeting antibodies. eLife 6, e27389 (2017).
pubmed: 28548638 pmcid: 5472438
Kashyap, A. K. et al. Combinatorial antibody libraries from survivors of the Turkish H5N1 avian influenza outbreak reveal virus neutralization strategies. Proc. Natl Acad. Sci. USA 105, 5986–5991 (2008).
pubmed: 18413603
Lang, S. et al. Antibody 27F3 broadly targets influenza A group 1 and 2 hemagglutinins through a further variation in VH1–69 antibody orientation on the HA stem. Cell Rep. 20, 2935–2943 (2017).
pubmed: 28930686 pmcid: 5679313
Sui, J. et al. Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses. Nat. Struct. Mol. Biol. 16, 265–273 (2009).
pubmed: 19234466 pmcid: 2692245
Throsby, M. et al. Heterosubtypic neutralizing monoclonal antibodies cross-protective against H5N1 and H1N1 recovered from human IgM+ memory B cells. PLoS ONE 3, e3942 (2008).
pubmed: 19079604 pmcid: 2596486
Lerner, R. A. Rare antibodies from combinatorial libraries suggests an S. O. S. component of the human immunological repertoire. Mol. Biosyst. 7, 1004–1012 (2011).
pubmed: 21298133
Lerner, R. A. Combinatorial antibody libraries: new advances, new immunological insights. Nat. Rev. Immunol. 16, 498–508 (2016).
pubmed: 27374636
Pallesen, J. et al. Structures of Ebola virus GP and sGP in complex with therapeutic antibodies. Nat. Microbiol. 1, 16128 (2016).
pubmed: 27562261 pmcid: 5003320
de La Vega, M. A., Wong, G., Kobinger, G. P. & Qiu, X. The multiple roles of sGP in Ebola pathogenesis. Viral Immunol. 28, 3–9 (2015).
Bornholdt, Z. A. et al. Isolation of potent neutralizing antibodies from a survivor of the 2014 Ebola virus outbreak. Science 351, 1078–1083 (2016).
pubmed: 26912366 pmcid: 4900763
Flyak, A. I. et al. Cross-reactive and potent neutralizing antibody responses in human survivors of natural ebolavirus infection. Cell 164, 392–405 (2016).
pubmed: 26806128 pmcid: 4733404
Wilson, J. A. et al. Epitopes involved in antibody-mediated protection from Ebola virus. Science 287, 1664–1666 (2000).
pubmed: 10698744
Howell, K. A. et al. Cooperativity enables non-neutralizing antibodies to neutralize ebolavirus. Cell Rep. 19, 413–424 (2017).
pubmed: 28402862 pmcid: 6082427
Kwong, P. D. & Mascola, J. R. HIV-1 vaccines based on antibody identification, B cell ontogeny, and epitope structure. Immunity 48, 855–871 (2018).
pubmed: 29768174
Flynn, N. M. et al. Placebo-controlled phase 3 trial of a recombinant glycoprotein 120 vaccine to prevent HIV-1 infection. J. Infect. Dis. 191, 654–665 (2005).
pubmed: 15688278
Pitisuttithum, P. et al. Randomized, double-blind, placebo-controlled efficacy trial of a bivalent recombinant glycoprotein 120 HIV-1 vaccine among injection drug users in Bangkok, Thailand. J. Infect. Dis. 194, 1661–1671 (2006).
pubmed: 17109337
Dolin, R. et al. The safety and immunogenicity of a human immunodeficiency virus type 1 (HIV-1) recombinant gp160 candidate vaccine in humans. NIAID AIDS Vaccine Clinical Trials Network. Ann. Intern. Med. 114, 119–127 (1991).
pubmed: 1984386
Cooney, E. L. et al. Safety of and immunological response to a recombinant vaccinia virus vaccine expressing HIV envelope glycoprotein. Lancet 337, 567–572 (1991).
pubmed: 1671940
Burton, D. R. et al. HIV vaccine design and the neutralizing antibody problem. Nat. Immunol. 5, 233–236 (2004).
pubmed: 14985706
Gonzalez, N. et al. Characterization of broadly neutralizing antibody responses to HIV-1 in a cohort of long term non-progressors. PLoS ONE 13, e0193773 (2018).
pubmed: 29558468 pmcid: 5860703
Gray, E. S. et al. The neutralization breadth of HIV-1 develops incrementally over four years and is associated with CD4+ T cell decline and high viral load during acute infection. J. Virol. 85, 4828–4840 (2011).
pubmed: 21389135 pmcid: 3126191
Kelsoe, G. & Haynes, B. F. Host controls of HIV broadly neutralizing antibody development. Immunol. Rev. 275, 79–88 (2017).
pubmed: 28133807 pmcid: 5479487
Burton, D. R. et al. Efficient neutralization of primary isolates of HIV-1 by a recombinant human monoclonal antibody. Science 266, 1024–1027 (1994).
pubmed: 7973652
Muster, T. et al. A conserved neutralizing epitope on gp41 of human immunodeficiency virus type 1. J. Virol. 67, 6642–6647 (1993).
pubmed: 7692082 pmcid: 238102
Trkola, A. et al. Human monoclonal antibody 2G12 defines a distinctive neutralization epitope on the gp120 glycoprotein of human immunodeficiency virus type 1. J. Virol. 70, 1100–1108 (1996).
pubmed: 8551569 pmcid: 189917
Buchacher, A. et al. Generation of human monoclonal antibodies against HIV-1 proteins; electrofusion and Epstein-Barr virus transformation for peripheral blood lymphocyte immortalization. AIDS Res. Hum. Retrov. 10, 359–369 (1994).
Binley, J. M. et al. A recombinant human immunodeficiency virus type 1 envelope glycoprotein complex stabilized by an intermolecular disulfide bond between the gp120 and gp41 subunits is an antigenic mimic of the trimeric virion-associated structure. J. Virol. 74, 627–643 (2000).
pubmed: 10623724 pmcid: 111582
Sanders, R. W. et al. Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1. J. Virol. 76, 8875–8889 (2002).
pubmed: 12163607 pmcid: 136973
Sanders, R. W. et al. A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies. PLoS Pathog. 9, e1003618 (2013).
pubmed: 3777863 pmcid: 3777863
Sanders, R. W. & Moore, J. P. Native-like Env trimers as a platform for HIV-1 vaccine design. Immunol. Rev. 275, 161–182 (2017).
pubmed: 5299501 pmcid: 5299501
Sanders, R. W., Wilson, I. A. & Moore, J. P. HIV’s Achilles’ heel. Sci. Am. 315, 50–55 (2016).
pubmed: 28004685
Torrents de la Pena, A. et al. Improving the immunogenicity of native-like HIV-1 envelope trimers by hyperstabilization. Cell Rep. 20, 1805–1817 (2017).
pubmed: 28834745 pmcid: 5590011
Voss, J. E. et al. Elicitation of neutralizing antibodies targeting the V2 apex of the HIV envelope trimer in a wild-type animal model. Cell Rep. 21, 222–235 (2017).
pubmed: 28978475 pmcid: 5640805
de Taeye, S. W. et al. Immunogenicity of stabilized HIV-1 envelope trimers with reduced exposure of non-neutralizing epitopes. Cell 163, 1702–1715 (2015).
pubmed: 26687358 pmcid: 4732737
Kulp, D. W. & Schief, W. R. Advances in structure-based vaccine design. Curr. Opin. Virol. 3, 322–331 (2013).
pubmed: 23806515 pmcid: 4102719
Kulp, D. W. et al. Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding. Nat. Commun. 8, 1655 (2017).
pubmed: 29162799 pmcid: 5698488
Correia, B. E. et al. Proof of principle for epitope-focused vaccine design. Nature 507, 201–206 (2014).
pubmed: 24499818 pmcid: 4260937
Jardine, J. et al. Rational HIV immunogen design to target specific germline B cell receptors. Science 340, 711–716 (2013).
pubmed: 23539181 pmcid: 3689846
Jardine, J. G. et al. HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. Science 351, 1458–1463 (2016).
pubmed: 27013733 pmcid: 4872700
Jardine, J. G. et al. HIV-1 VACCINES. Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen. Science 349, 156–161 (2015).
pubmed: 26089355 pmcid: 4669217
Correia, B. E. et al. Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope. Structure 18, 1116–1126 (2010).
pubmed: 20826338
McLellan, J. S. et al. Design and characterization of epitope-scaffold immunogens that present the motavizumab epitope from respiratory syncytial virus. J. Mol. Biol. 409, 853–866 (2011).
pubmed: 21549714 pmcid: 3107930
Ofek, G. et al. Elicitation of structure-specific antibodies by epitope scaffolds. Proc. Natl Acad. Sci. USA 107, 17880–17887 (2010).
pubmed: 20876137
de Taeye, S. W., Moore, J. P. & Sanders, R. W. HIV-1 Envelope trimer design and immunization strategies to induce broadly neutralizing antibodies. Trends Immunol. 37, 221–232 (2016).
pubmed: 26869204 pmcid: 5454186
Sanders, R. W. et al. HIV-1 VACCINES. HIV-1 neutralizing antibodies induced by native-like envelope trimers. Science 349, aac4223 (2015).
pubmed: 26089353 pmcid: 4498988
Pauthner, M. et al. Elicitation of robust tier 2 neutralizing antibody responses in nonhuman primates by HIV envelope trimer immunization using optimized approaches. Immunity 46, 1073–1088 (2017).
pubmed: 28636956 pmcid: 5483234
Krammer, F. et al. Assessment of influenza virus hemagglutinin stalk-based immunity in ferrets. J. Virol. 88, 3432–3442 (2014).
pubmed: 24403585 pmcid: 3957929
Krammer, F. et al. H3 stalk-based chimeric hemagglutinin influenza virus constructs protect mice from H7N9 challenge. J. Virol. 88, 2340–2343 (2014).
pubmed: 24307585 pmcid: 3911549
Mallajosyula, V. V. et al. Influenza hemagglutinin stem-fragment immunogen elicits broadly neutralizing antibodies and confers heterologous protection. Proc. Natl Acad. Sci. USA 111, E2514–E2523 (2014).
pubmed: 24927560
Wohlbold, T. J. et al. Vaccination with soluble headless hemagglutinin protects mice from challenge with divergent influenza viruses. Vaccine 33, 3314–3321 (2015).
pubmed: 26026378 pmcid: 4472732
Hai, R. et al. Influenza viruses expressing chimeric hemagglutinins: globular head and stalk domains derived from different subtypes. J. Virol. 86, 5774–5781 (2012).
pubmed: 22398287 pmcid: 3347257
Goo, L., Chohan, V., Nduati, R. & Overbaugh, J. Early development of broadly neutralizing antibodies in HIV-1-infected infants. Nat. Med. 20, 655–658 (2014).
pubmed: 24859529 pmcid: 4060046
van den Kerkhof, T. L. et al. Early development of broadly reactive HIV-1 neutralizing activity in elite neutralizers. AIDS 28, 1237–1240 (2014).
pubmed: 24556870
Sok, D. et al. Priming HIV-1 broadly neutralizing antibody precursors in human Ig loci transgenic mice. Science 353, 1557–1560 (2016).
pubmed: 27608668 pmcid: 5404394
Havenar-Daughton, C. et al. The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen. Sci. Transl Med. 10, eaat0381 (2018).
pubmed: 29973404 pmcid: 6145074
Havenar-Daughton, C., Abbott, R. K., Schief, W. R. & Crotty, S. When designing vaccines, consider the starting material: the human B cell repertoire. Curr. Opin. Immunol. 53, 209–216 (2018).
pubmed: 30190230 pmcid: 6148213
Arnaout, R. et al. High-resolution description of antibody heavy-chain repertoires in humans. PLoS ONE 6, e22365 (2011).
pubmed: 21829618 pmcid: 3150326
DeKosky, B. J. et al. In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire. Nat. Med. 21, 86–91 (2015).
pubmed: 25501908
Abbott, R. K. et al. Precursor frequency and affinity determine B cell competitive fitness in germinal centers, tested with germline-targeting HIV vaccine immunogens. Immunity 48, 133–146 (2018).
pubmed: 29287996
Havenar-Daughton, C. et al. Direct probing of germinal center responses reveals immunological features and bottlenecks for neutralizing antibody responses to HIV Env trimer. Cell Rep. 17, 2195–2209 (2016).
pubmed: 27880897 pmcid: 5142765
Doria-Rose, N. A. et al. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. Nature 509, 55–62 (2014).
pubmed: 24590074 pmcid: 4395007
Bonsignori, M. et al. Maturation pathway from germline to broad HIV-1 neutralizer of a CD4-mimic antibody. Cell 165, 449–463 (2016).
pubmed: 26949186 pmcid: 4826291
Rantalainen, K. et al. Co-evolution of HIV envelope and apex-targeting neutralizing antibody lineage provides benchmarks for vaccine design. Cell Rep. 23, 3249–3261 (2018).
pubmed: 29898396 pmcid: 6019700
Landais, E. et al. Broadly neutralizing antibody responses in a large longitudinal Sub-Saharan HIV primary infection cohort. PLoS Pathog. 12, e1005369 (2016).
pubmed: 26766578 pmcid: 4713061
Landais, E. et al. HIV Envelope glycoform heterogeneity and localized diversity govern the Initiation and maturation of a V2 apex broadly neutralizing antibody lineage. Immunity 47, 990–1003 (2017).
pubmed: 29166592 pmcid: 5736302
Doria-Rose, N. A. et al. New member of the V1V2-directed CAP256-VRC26 lineage that shows increased breadth and exceptional potency. J. Virol. 90, 76–91 (2016).
pubmed: 26468542
Dosenovic, P. et al. Immunization for HIV-1 broadly neutralizing antibodies in human Ig knockin mice. Cell 161, 1505–1515 (2015).
pubmed: 26091035 pmcid: 4604566
Escolano, A. et al. Sequential immunization elicits broadly neutralizing anti-HIV-1 antibodies in Ig knockin mice. Cell 166, 1445–1458 (2016).
pubmed: 27610569 pmcid: 5019122
Lee, E. C. et al. Complete humanization of the mouse immunoglobulin loci enables efficient therapeutic antibody discovery. Nat. Biotechnol. 32, 356–363 (2014).
pubmed: 24633243
Acharya, P. et al. CD4-binding-site recognition by VH1–46 germline-derived HIV-1 neutralizers. AIDS Res. Hum. Retrov. 30, A120–A121 (2014).
pmcid: 4228769
Gorny, M. K. et al. Preferential use of the VH5–51 gene segment by the human immune response to code for antibodies against the V3 domain of HIV-1. Mol. Immunol. 46, 917–926 (2009).
pubmed: 18952295
Huang, C. C. et al. Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120. Proc. Natl Acad. Sci. USA 101, 2706–2711 (2004).
pubmed: 14981267
Baize, S. et al. Emergence of Zaire Ebola virus disease in Guinea. N. Engl. J. Med. 371, 1418–1425 (2014).
pubmed: 24738640
Oswald, W. B. et al. Neutralizing antibody fails to impact the course of Ebola virus infection in monkeys. PLoS Pathog. 3, e9 (2007).
pubmed: 17238286 pmcid: 1779296
Qiu, X. et al. Sustained protection against Ebola virus infection following treatment of infected nonhuman primates with ZMAb. Sci. Rep. 3, 3365 (2013).
pubmed: 24284388 pmcid: 3842534
Pettitt, J. et al. Therapeutic intervention of Ebola virus infection in rhesus macaques with the MB-003 monoclonal antibody cocktail. Sci. Transl Med. 5, 199ra113 (2013).
pubmed: 23966302
Murin, C. D. et al. Structures of protective antibodies reveal sites of vulnerability on Ebola virus. Proc. Natl Acad. Sci. USA 111, 17182–17187 (2014).
pubmed: 25404321
Qiu, X. et al. Reversion of advanced Ebola virus disease in nonhuman primates with ZMapp. Nature 514, 47–53 (2014).
pubmed: 25171469 pmcid: 4214273
Group, P. I. W. et al. A randomized, controlled trial of ZMapp for ebola virus infection. N. Engl. J. Med. 375, 1448–1456 (2016).
Henao-Restrepo, A. M. et al. Efficacy and effectiveness of an rVSV-vectored vaccine in preventing Ebola virus disease: final results from the Guinea ring vaccination, open-label, cluster-randomised trial (Ebola Ca Suffit!). Lancet 389, 505–518 (2017).
pubmed: 28017403 pmcid: 5364328
Rimoin, A. W. et al. Ebola virus neutralizing antibodies detectable in survivors of the Yambuku, Zaire outbreak 40 years after infection. J. Infect. Dis. 217, 223–231 (2018).
pubmed: 29253164
Pascal, K. E. et al. Development of clinical-stage human monoclonal antibodies that treat advanced Ebola virus disease in non-human primates. J. Infect. Dis. 218, 612–626 (2018).
Misasi, J. et al. Filoviruses require endosomal cysteine proteases for entry but exhibit distinct protease preferences. J. Virol. 86, 3284–3292 (2012).
pubmed: 22238307 pmcid: 3302294
Saphire, E. O. et al. Systematic analysis of monoclonal antibodies against Ebola virus GP defines features that contribute to protection. Cell 174, 938–952 (2018).
pubmed: 30096313 pmcid: 6102396
Murphy, A. J. et al. Mice with megabase humanization of their immunoglobulin genes generate antibodies as efficiently as normal mice. P. Natl Acad. Sci. USA 111, 5153–5158 (2014).
Beniac, D. R. et al. The organisation of Ebola virus reveals a capacity for extensive, modular polyploidy. PLoS ONE 7, e29608 (2012).
pubmed: 22247782 pmcid: 3256159
Harris, A. et al. Influenza virus pleiomorphy characterized by cryoelectron tomography. Proc. Natl Acad. Sci. USA 103, 19123–19127 (2006).
pubmed: 17146053
Liu, J., Bartesaghi, A., Borgnia, M. J., Sapiro, G. & Subramaniam, S. Molecular architecture of native HIV-1 gp120 trimers. Nature 455, 109–113 (2008).
pubmed: 2610422 pmcid: 2610422
Liu, J., Wright, E. R. & Winkler, H. 3D visualization of HIV virions by cryoelectron tomography. Method Enzymol. 483, 267–290 (2010).
Klein, J. S. & Bjorkman, P. J. Few and far between: How HIV may be evading antibody avidity. PLoS Pathog. 6, e1000908 (2010).
pubmed: 20523901 pmcid: 2877745
Galimidi, R. P. et al. Intra-spike crosslinking overcomes antibody evasion by HIV-1. Cell 160, 433–446 (2015).
pubmed: 25635457 pmcid: 4401576
Walker, L. M. et al. Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target. Science 326, 285–289 (2009).
pubmed: 19729618 pmcid: 19729618
Scheid, J. F. et al. Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals. Nature 458, 636–640 (2009).
pubmed: 19287373
Simek, M. D. et al. Human immunodeficiency virus type 1 elite neutralizers: individuals with broad and potent neutralizing activity identified by using a high-throughput neutralization assay together with an analytical selection algorithm. J. Virol. 83, 7337–7348 (2009).
pubmed: 19439467 pmcid: 19439467
Walker, L. M. et al. Broad neutralization coverage of HIV by multiple highly potent antibodies. Nature 477, 466–470 (2011).
pubmed: 21849977 pmcid: 21849977
Cirelli, K. M. & Crotty, S. Germinal center enhancement by extended antigen availability. Curr. Opin. Immunol. 47, 64–69 (2017).
pubmed: 28738289 pmcid: 5626612
Crotty, S. Raging evolution of a B cell response to a viral infection. Nat. Rev. Immunol. 18, 79 (2018).
pubmed: 29292394
Horwitz, J. A. et al. Non-neutralizing antibodies alter the course of HIV-1 infection in vivo. Cell 170, 637–648 (2017).
pubmed: 28757252 pmcid: 28757252
Mayr, L., Su, B. & Moog, C. Role of non-neutralizing antibodies in vaccines and/or HIV infected individuals. Curr. Opin. HIV AIDS 12, 209–215 (2017).
pubmed: 28422785
Forthal, D., Hope, T. J. & Alter, G. New paradigms for functional HIV-specific non-neutralizing antibodies. Curr. Opin. HIV AIDS 8, 393–401 (2013).
pubmed: 23924999 pmcid: 4097845
Kajihara, M. et al. Inhibition of Marburg virus budding by non-neutralizing antibodies to the envelope glycoprotein. J. Virol. 86, 13467–13474 (2012).
pubmed: 23035224 pmcid: 3503067
Bournazos, S. et al. Broadly neutralizing anti-HIV-1 antibodies require Fc effector functions for in vivo activity. Cell 158, 1243–1253 (2014).
pubmed: 25215485 pmcid: 4167398
Bournazos, S. & Ravetch, J. V. Anti-retroviral antibody FcγR-mediated effector functions. Immunol. Rev. 275, 285–295 (2017).
pubmed: 28133801
Bournazos, S. & Ravetch, J. V. Fcγ receptor function and the design of vaccination strategies. Immunity 47, 224–233 (2017).
pubmed: 28813656 pmcid: 5573140
Nimmerjahn, F. & Ravetch, J. V. Fcγ receptors: old friends and new family members. Immunity 24, 19–28 (2006).
pubmed: 16413920
Nimmerjahn, F. & Ravetch, J. V. Fc-receptors as regulators of immunity. Adv. Immunol. 96, 179–204 (2007).
pubmed: 17981207
Nimmerjahn, F. & Ravetch, J. V. Fcγ receptors as regulators of immune responses. Nat. Rev. Immunol. 8, 34–47 (2008).
Pelegrin, M., Naranjo-Gomez, M. & Piechaczyk, M. Antiviral monoclonal antibodies: can they be more than simple neutralizing agents? Trends Microbiol. 23, 653–665 (2015).
pubmed: 26433697

Auteurs

Charles D Murin (CD)

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

Ian A Wilson (IA)

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, International AIDS Vaccine Initiative Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery, The Scripps Research Institute, La Jolla, CA, USA.
Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA, USA.

Andrew B Ward (AB)

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA. andrew@scripps.edu.
Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, International AIDS Vaccine Initiative Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery, The Scripps Research Institute, La Jolla, CA, USA. andrew@scripps.edu.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH