A targeted genomic alteration analysis predicts survival of melanoma patients under BRAF inhibitors.

BRAF inhibitors melanoma predictive analysis targeted genomic alteration targeted therapy resistance

Journal

Oncotarget
ISSN: 1949-2553
Titre abrégé: Oncotarget
Pays: United States
ID NLM: 101532965

Informations de publication

Date de publication:
01 Mar 2019
Historique:
received: 22 03 2018
accepted: 31 01 2019
entrez: 23 3 2019
pubmed: 23 3 2019
medline: 23 3 2019
Statut: epublish

Résumé

Several mechanisms have been described to elucidate the emergence of resistance to MAPK inhibitors in melanoma and there is a crucial need for biomarkers to identify patients who are likely to achieve a better and long-lasting response to BRAF inhibitors therapy. In this study, we developed a targeted approach combining both mRNA and DNA alterations analysis focusing on relevant gene alterations involved in acquired BRAF inhibitor resistance. We collected baseline tumor samples from 64 melanoma patients at BRAF inhibitor treatment initiation and showed that the presence, prior to treatment, of mRNA over-expression of genes' subset was significantly associated with improved progression free survival and overall survival. The presence of DNA alterations was in favor of better overall survival. The genomic analysis of relapsed-matched tumor samples from 20 patients allowed us to uncover the largest landscape of resistance mechanisms reported to date as at least one resistance mechanism was identified for each patient studied. Alterations in

Identifiants

pubmed: 30899440
doi: 10.18632/oncotarget.26707
pii: 26707
pmc: PMC6422198
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1669-1687

Déclaration de conflit d'intérêts

CONFLICTS OF INTEREST BL, JD, CRdM, LG, FJ, AS, MPP, IC, OM, JC, JPF and ND have no conflicts of interest to declare. MB declares a consulting role for Histalim, Bristol-Myers Squibb, and Innate Pharma. SD is a principal investigator in studies conducted by Roche-Genentech and Novartis. CL declares honoraria from Roche, advisory roles at Roche, GSK, Novartis, BMS, MSD, and Amgen and travel accommodation provided by Roche. SM declares a consulting role at Roche, Janssen and Novartis.

Références

PLoS Biol. 2004 Apr;2(4):E108
pubmed: 15094809
J Transl Med. 2006 Nov 27;4:50
pubmed: 17129373
Clin Cancer Res. 2008 Nov 1;14(21):6821-8
pubmed: 18980976
Nature. 2008 Dec 11;456(7223):809-13
pubmed: 18997771
Eur J Cancer. 2009 Jan;45(2):228-47
pubmed: 19097774
Int J Oncol. 2009 Apr;34(4):995-1003
pubmed: 19287956
N Engl J Med. 2010 Aug 26;363(9):809-19
pubmed: 20818844
Nature. 2010 Dec 16;468(7326):973-7
pubmed: 21107323
Cancer Cell. 2010 Dec 14;18(6):683-95
pubmed: 21156289
Cancer Res. 2011 Apr 1;71(7):2750-60
pubmed: 21317224
J Clin Oncol. 2011 Aug 1;29(22):3085-96
pubmed: 21383288
N Engl J Med. 2011 Jun 30;364(26):2507-16
pubmed: 21639808
Oncogene. 2012 Jan 26;31(4):446-57
pubmed: 21725359
Nature. 2011 Nov 23;480(7377):387-90
pubmed: 22113612
Cancer Res. 2012 Feb 15;72(4):969-78
pubmed: 22205714
Neoplasia. 2011 Dec;13(12):1132-42
pubmed: 22241959
N Engl J Med. 2012 Feb 23;366(8):707-14
pubmed: 22356324
Nat Commun. 2012 Mar 06;3:724
pubmed: 22395615
Lancet. 2012 Jul 28;380(9839):358-65
pubmed: 22735384
Cancer Cell. 2012 Jul 10;22(1):21-35
pubmed: 22789536
J Invest Dermatol. 2013 Feb;133(2):509-17
pubmed: 22931913
Cancer Discov. 2013 Feb;3(2):158-67
pubmed: 23242808
J Clin Oncol. 2013 Feb 1;31(4):482-9
pubmed: 23248257
J Clin Oncol. 2013 May 10;31(14):1767-74
pubmed: 23569304
Mol Cancer Ther. 2013 Jul;12(7):1332-42
pubmed: 23645591
Hum Pathol. 2013 Sep;44(9):1902-11
pubmed: 23664541
Clin Cancer Res. 2013 Sep 1;19(17):4868-78
pubmed: 23833299
J Invest Dermatol. 2014 Apr;134(4):1067-1074
pubmed: 24129063
Melanoma Res. 2014 Feb;24(1):75-82
pubmed: 24241686
Cancer Discov. 2014 Jan;4(1):94-109
pubmed: 24265153
Cancer Discov. 2014 Jan;4(1):80-93
pubmed: 24265155
Clin Cancer Res. 2014 Apr 1;20(7):1965-77
pubmed: 24463458
Melanoma Res. 2014 Aug;24(4):415-8
pubmed: 24933605
Anal Bioanal Chem. 2014 Sep;406(22):5513-20
pubmed: 24969466
Blood. 2014 Sep 4;124(10):1655-8
pubmed: 24982505
Nature. 2014 Sep 4;513(7516):105-9
pubmed: 25079330
N Engl J Med. 2014 Nov 13;371(20):1867-76
pubmed: 25265494
N Engl J Med. 2015 Jan 1;372(1):30-9
pubmed: 25399551
N Engl J Med. 2014 Dec 4;371(23):2189-2199
pubmed: 25409260
PLoS One. 2015 Mar 19;10(3):e0120232
pubmed: 25789737
Lancet. 2015 Aug 1;386(9992):444-51
pubmed: 26037941
Cell. 2015 Sep 10;162(6):1271-85
pubmed: 26359985
Eur J Cancer. 2015 Dec;51(18):2792-9
pubmed: 26608120
Oncotarget. 2016 Mar 22;7(12):14415-28
pubmed: 26883106
Cell. 2016 Mar 24;165(1):35-44
pubmed: 26997480
Eur Respir J. 2016 Jun;47(6):1785-96
pubmed: 27076591
EBioMedicine. 2016 Jun;8:132-149
pubmed: 27428425
Lancet Oncol. 2016 Sep;17(9):1248-60
pubmed: 27480103
Oncotarget. 2016 Dec 27;7(52):86561-86572
pubmed: 27863408
Cancer Metastasis Rev. 2017 Mar;36(1):53-75
pubmed: 28210865
Nat Rev Clin Oncol. 2017 Aug;14(8):463-482
pubmed: 28374786
Oncotarget. 2017 Apr 25;8(17):28144-28153
pubmed: 28423653
Clin Cancer Res. 2017 Sep 1;23(17):5238-5245
pubmed: 28536307
Cancer. 2017 Jun 1;123(S11):2118-2129
pubmed: 28543695
Oncotarget. 2017 Aug 24;8(43):75007-75024
pubmed: 29088841
NPJ Precis Oncol. 2018 Mar 7;2(1):7
pubmed: 29872725
J Biol Chem. 1996 Apr 5;271(14):8313-20
pubmed: 8626527

Auteurs

Baptiste Louveau (B)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Julie Delyon (J)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Dermatology, Saint-Louis Hospital, AP-HP, Paris, France.

Coralie Reger De Moura (CR)

Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Maxime Battistella (M)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Department of Pathology, Saint-Louis Hospital, AP-HP, Paris, France.
Paris Diderot University, Inserm, UMR_S1165, Paris, France.

Fanelie Jouenne (F)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Lisa Golmard (L)

Department of Genetics, Pôle de Médecine Diagnostique et Théranostique, Institut Curie, Paris, France.

Aurelie Sadoux (A)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Marie-Pierre Podgorniak (MP)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Ichrak Chami (I)

Department of Dermatology, Saint-Louis Hospital, AP-HP, Paris, France.

Oren Marco (O)

Department of Plastic, Reconstructive and Esthetic Surgery, Saint-Louis Hospital, AP-HP, Paris, France.

Julie Caramel (J)

Université de Lyon, Université Claude Bernard Lyon 1, INSERM 1052, CNRS 5286, Centre Léon Bérard, Cancer Research Center of Lyon, Equipe Labellisée Ligue contre le Cancer, Lyon, France.

Stephane Dalle (S)

Université de Lyon, Université Claude Bernard Lyon 1, INSERM 1052, CNRS 5286, Centre Léon Bérard, Cancer Research Center of Lyon, Equipe Labellisée Ligue contre le Cancer, Lyon, France.
Centre Hospitalier Lyon Sud, Hospices Civils de Lyon, Pierre Bénite, France.

Jean-Paul Feugeas (JP)

Université de Franche-Comté, Inserm, UMR_1137, Paris, France.

Nicolas Dumaz (N)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.

Celeste Lebbe (C)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Dermatology, Saint-Louis Hospital, AP-HP, Paris, France.

Samia Mourah (S)

Paris-Diderot University, Sorbonne Paris Cité, Paris, France.
Paris-Diderot University, Inserm, UMR_S976, Paris, France.
Department of Pharmacogenomics, Saint-Louis Hospital, AP-HP, Paris, France.

Classifications MeSH