Hemap: An Interactive Online Resource for Characterizing Molecular Phenotypes across Hematologic Malignancies.


Journal

Cancer research
ISSN: 1538-7445
Titre abrégé: Cancer Res
Pays: United States
ID NLM: 2984705R

Informations de publication

Date de publication:
15 05 2019
Historique:
received: 19 09 2018
revised: 08 02 2019
accepted: 29 03 2019
pubmed: 4 4 2019
medline: 8 2 2020
entrez: 4 4 2019
Statut: ppublish

Résumé

Large collections of genome-wide data can facilitate the characterization of disease states and subtypes, permitting pan-cancer analysis of molecular phenotypes and evaluation of disease context for new therapeutic approaches. We analyzed 9,544 transcriptomes from more than 30 hematologic malignancies, normal blood cell types, and cell lines, and showed that disease types could be stratified in a data-driven manner. We then identified cluster-specific pathway activity, new biomarkers, and

Identifiants

pubmed: 30940663
pii: 0008-5472.CAN-18-2970
doi: 10.1158/0008-5472.CAN-18-2970
doi:

Substances chimiques

Antineoplastic Agents 0
Biomarkers, Tumor 0
Bridged Bicyclo Compounds, Heterocyclic 0
Proto-Oncogene Proteins c-bcl-2 0
Small Molecule Libraries 0
Sulfonamides 0
venetoclax N54AIC43PW

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2466-2479

Informations de copyright

©2019 American Association for Cancer Research.

Auteurs

Petri Pölönen (P)

Institute of Biomedicine, School of Medicine, University of Eastern Finland, Kuopio, Finland.

Juha Mehtonen (J)

Institute of Biomedicine, School of Medicine, University of Eastern Finland, Kuopio, Finland.

Jake Lin (J)

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Institute for Molecular Medicine Finland FIMM, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland.

Thomas Liuksiala (T)

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Tampere Center for Child Health Research, Tampere University and Tampere University Hospital, Tampere, Finland.

Sergei Häyrynen (S)

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.

Susanna Teppo (S)

Tampere Center for Child Health Research, Tampere University and Tampere University Hospital, Tampere, Finland.

Artturi Mäkinen (A)

Tampere Center for Child Health Research, Tampere University and Tampere University Hospital, Tampere, Finland.
Tampere University Hospital and Fimlab Laboratories, Tampere, Finland.

Ashwini Kumar (A)

Institute for Molecular Medicine Finland FIMM, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland.

Disha Malani (D)

Institute for Molecular Medicine Finland FIMM, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland.

Virva Pohjolainen (V)

Tampere University Hospital and Fimlab Laboratories, Tampere, Finland.

Kimmo Porkka (K)

Hematology Research Unit Helsinki, University of Helsinki and Department of Hematology, Helsinki University Central Hospital Cancer Center, Helsinki, Finland.

Caroline A Heckman (CA)

Institute for Molecular Medicine Finland FIMM, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland.

Patrick May (P)

Luxembourg Center for Systems Biomedicine, University of Luxembourg, Esch-Belval, Luxembourg.

Ville Hautamäki (V)

School of Computing, University of Eastern Finland, Kuopio, Finland.

Kirsi J Granberg (KJ)

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.

Olli Lohi (O)

Tampere Center for Child Health Research, Tampere University and Tampere University Hospital, Tampere, Finland. matti.nykter@uta.fi olli.lohi@uta.fi merja.heinaniemi@uef.fi.

Matti Nykter (M)

Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. matti.nykter@uta.fi olli.lohi@uta.fi merja.heinaniemi@uef.fi.

Merja Heinäniemi (M)

Institute of Biomedicine, School of Medicine, University of Eastern Finland, Kuopio, Finland. matti.nykter@uta.fi olli.lohi@uta.fi merja.heinaniemi@uef.fi.

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Classifications MeSH