Leveraging summary statistics to make inferences about complex phenotypes in large biobanks.
biobank
computational challenges
data security
genetics
genome-wide association study
phenotypes
privacy
single nucleotide variant
Journal
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
ISSN: 2335-6936
Titre abrégé: Pac Symp Biocomput
Pays: United States
ID NLM: 9711271
Informations de publication
Date de publication:
2019
2019
Historique:
entrez:
10
4
2019
pubmed:
10
4
2019
medline:
2
1
2020
Statut:
ppublish
Résumé
As genetic sequencing becomes less expensive and data sets linking genetic data and medical records (e.g., Biobanks) become larger and more common, issues of data privacy and computational challenges become more necessary to address in order to realize the benefits of these datasets. One possibility for alleviating these issues is through the use of already-computed summary statistics (e.g., slopes and standard errors from a regression model of a phenotype on a genotype). If groups share summary statistics from their analyses of biobanks, many of the privacy issues and computational challenges concerning the access of these data could be bypassed. In this paper we explore the possibility of using summary statistics from simple linear models of phenotype on genotype in order to make inferences about more complex phenotypes (those that are derived from two or more simple phenotypes). We provide exact formulas for the slope, intercept, and standard error of the slope for linear regressions when combining phenotypes. Derived equations are validated via simulation and tested on a real data set exploring the genetics of fatty acids.
Substances chimiques
Fatty Acids
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
391-402Subventions
Organisme : NHGRI NIH HHS
ID : R15 HG006915
Pays : United States
Références
J Law Med Ethics. 2016 Mar;44(1):156-60
pubmed: 27256131
Prostaglandins Leukot Essent Fatty Acids. 2015 Mar;94:65-72
pubmed: 25500335
Biometrics. 1997 Dec;53(4):1253-61
pubmed: 9423247
PLoS Med. 2015 Mar 31;12(3):e1001779
pubmed: 25826379
Atherosclerosis. 2012 Dec;225(2):425-31
pubmed: 22727409
PLoS One. 2018 Apr 13;13(4):e0194882
pubmed: 29652918