Notable effect of water on excess electron attachment to aqueous DNA deoxyribonucleosides.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
24 Apr 2019
Historique:
pubmed: 16 4 2019
medline: 28 11 2019
entrez: 16 4 2019
Statut: ppublish

Résumé

Computations using the combined quantum mechanical/molecular mechanical (QM/MM) method were performed to investigate excess electron attachment to and detachment from aqueous deoxyribonucleosides (dRNs). The QM/MM vertical electron affinities (VEAs) of four dRNs are higher than the values of the corresponding nucleobases by ∼0.20 eV. The QM/MM diabatic electron affinities (AEAs) are much larger than the calculations of the implicit solvent model. Bulk water induces evident VEA and AEA increases and boosts the vertical detachment energies by over 1.20 eV. It affects excess electron attachment to and detachment from aqueous dRNs and stabilizes the anions. Moreover, the water molecules around deoxyadenosine (dA) anions form intermolecular hydrogen bonds with dA and break the intramolecular hydrogen bond of dA which had been found in the gas structure. In vertical electron attachment, ∼50% of excess electrons would be delocalized over the water molecules around the dRNs. The anionic structural relaxations cause the transfer of ∼-0.30 e excess electrons from the water molecules to the dRN nucleobases. However, the main excess electrons (∼-0.76 e) would be localized on dRN nucleobases in the stable anionic structure.

Identifiants

pubmed: 30984941
doi: 10.1039/c9cp00536f
doi:

Substances chimiques

Anions 0
Deoxyadenosines 0
Deoxyribonucleosides 0
Solvents 0
Water 059QF0KO0R
DNA 9007-49-2
2'-deoxyadenosine P582C98ULC

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

8925-8932

Auteurs

Yan Zhang (Y)

Institute of Molecular Sciences and Engineering, Shandong University, Qingdao, Binhai Road 72, Qingdao 266237, China. yan-zhang@sdu.edu.cn.

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Classifications MeSH