Imidazole in Aqueous Solution: Hydrogen Bond Interactions and Structural Reorganization with Concentration.


Journal

The journal of physical chemistry. B
ISSN: 1520-5207
Titre abrégé: J Phys Chem B
Pays: United States
ID NLM: 101157530

Informations de publication

Date de publication:
09 05 2019
Historique:
pubmed: 20 4 2019
medline: 20 4 2019
entrez: 20 4 2019
Statut: ppublish

Résumé

The structural and dynamic properties of imidazole in aqueous solution have been studied by means of classical and ab initio molecular dynamics simulations. We developed a new force field for the imidazole molecule with improved modeling of the electrostatic interactions, specifically tailored to address the well-known drawbacks of existing force fields based on the atomic fractional charge approach. To this end, we reparametrized the charge distribution on the heterocyclic ring, introducing an extra site accounting for the lone pair on the deprotonated nitrogen. The accuracy of the model in describing the hydrogen bond pattern in the aqueous solvent has been confirmed by comparing the classical results on imidazole-water interactions to accurate Car-Parrinello molecular dynamics simulations. It reproduces satisfactorily the experimental water/octanol partition coefficient of imidazole, as well as the structure of the imidazole molecular crystal. The force field has been finally applied to simulate aqueous solutions at various imidazole concentrations to obtain information on both imidazole-water and imidazole-imidazole interactions, providing a description of the different molecular arrangements in solution.

Identifiants

pubmed: 31002509
doi: 10.1021/acs.jpcb.9b01611
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

4055-4064

Auteurs

Marco Pagliai (M)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Giada Funghi (G)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Dario Vassetti (D)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Piero Procacci (P)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Riccardo Chelli (R)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Gianni Cardini (G)

Dipartimento di Chimica "Ugo Schiff" , Università degli Studi di Firenze , via della Lastruccia 3 , I-50019 Sesto Fiorentino , Italy.

Classifications MeSH