A Bioinformatics View of Glycan⁻Virus Interactions.
bioinformatics
carbohydrate
data integration
database
glycan
host–virus interactions
immunology
interoperability
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
23 04 2019
23 04 2019
Historique:
received:
05
03
2019
revised:
05
04
2019
accepted:
15
04
2019
entrez:
26
4
2019
pubmed:
26
4
2019
medline:
20
2
2020
Statut:
epublish
Résumé
Evidence of the mediation of glycan molecules in the interaction between viruses and their hosts is accumulating and is now partially reflected in several online databases. Bioinformatics provides convenient and efficient means of searching, visualizing, comparing, and sometimes predicting, interactions in numerous and diverse molecular biology applications related to the -omics fields. As viromics is gaining momentum, bioinformatics support is increasingly needed. We propose a survey of the current resources for searching, visualizing, comparing, and possibly predicting host-virus interactions that integrate the presence and role of glycans. To the best of our knowledge, we have mapped the specialized and general-purpose databases with the appropriate focus. With an illustration of their potential usage, we also discuss the strong and weak points of the current bioinformatics landscape in the context of understanding viral infection and the immune response to it.
Identifiants
pubmed: 31018588
pii: v11040374
doi: 10.3390/v11040374
pmc: PMC6521074
pii:
doi:
Substances chimiques
Polysaccharides
0
Receptors, Virus
0
Viral Proteins
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIGMS NIH HHS
ID : U41HG007822
Pays : United States
Déclaration de conflit d'intérêts
The authors declare no conflicts of interest.
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