Chemical features mining provides new descriptive structure-odor relationships.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
04 2019
Historique:
received: 20 09 2018
accepted: 11 03 2019
revised: 07 05 2019
pubmed: 26 4 2019
medline: 13 11 2019
entrez: 26 4 2019
Statut: epublish

Résumé

An important goal in researching the biology of olfaction is to link the perception of smells to the chemistry of odorants. In other words, why do some odorants smell like fruits and others like flowers? While the so-called stimulus-percept issue was resolved in the field of color vision some time ago, the relationship between the chemistry and psycho-biology of odors remains unclear up to the present day. Although a series of investigations have demonstrated that this relationship exists, the descriptive and explicative aspects of the proposed models that are currently in use require greater sophistication. One reason for this is that the algorithms of current models do not consistently consider the possibility that multiple chemical rules can describe a single quality despite the fact that this is the case in reality, whereby two very different molecules can evoke a similar odor. Moreover, the available datasets are often large and heterogeneous, thus rendering the generation of multiple rules without any use of a computational approach overly complex. We considered these two issues in the present paper. First, we built a new database containing 1689 odorants characterized by physicochemical properties and olfactory qualities. Second, we developed a computational method based on a subgroup discovery algorithm that discriminated perceptual qualities of smells on the basis of physicochemical properties. Third, we ran a series of experiments on 74 distinct olfactory qualities and showed that the generation and validation of rules linking chemistry to odor perception was possible. Taken together, our findings provide significant new insights into the relationship between stimulus and percept in olfaction. In addition, by automatically extracting new knowledge linking chemistry of odorants and psychology of smells, our results provide a new computational framework of analysis enabling scientists in the field to test original hypotheses using descriptive or predictive modeling.

Identifiants

pubmed: 31022180
doi: 10.1371/journal.pcbi.1006945
pii: PCOMPBIOL-D-18-01631
pmc: PMC6504111
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1006945

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Références

Sci Rep. 2018 May 31;8(1):8444
pubmed: 29855500
Nucleic Acids Res. 2018 Jan 4;46(D1):D1210-D1216
pubmed: 29059383
BMC Neurosci. 2016 Aug 08;17(1):55
pubmed: 27502425
Sci Signal. 2009 Mar 03;2(60):ra9
pubmed: 19261596
Chem Biodivers. 2014 Nov;11(11):1843-60
pubmed: 25408326
Front Psychol. 2014 Jan 24;5:12
pubmed: 24478743
Neuron. 2005 Feb 3;45(3):333-8
pubmed: 15694319
Hum Brain Mapp. 2016 Jun;37(6):2161-72
pubmed: 26991044
Curr Opin Neurobiol. 2008 Aug;18(4):438-44
pubmed: 18824102
Elife. 2015 Mar 03;4:
pubmed: 25732039
Eur J Med Chem. 2008 Jul;43(7):1525-9
pubmed: 18035451
Chem Senses. 2012 Oct;37(8):723-36
pubmed: 22824250
SAR QSAR Environ Res. 1993;1(2-3):221-31
pubmed: 8790635
Chem Senses. 2014 Mar;39(3):185-94
pubmed: 24429163
Angew Chem Int Ed Engl. 2006 Sep 25;45(38):6254-61
pubmed: 16983730
J R Soc Interface. 2009 Jan 6;6(30):75-86
pubmed: 18595834
Nat Prod Commun. 2010 Sep;5(9):1343-8
pubmed: 20922988
Nat Neurosci. 2011 Sep 25;14(11):1455-61
pubmed: 21946326
J Neurosci. 2007 Sep 12;27(37):10015-23
pubmed: 17855616
Nat Methods. 2008 May;5(5):425-9
pubmed: 18376403
Angew Chem Int Ed Engl. 2000 Sep 1;39(17):2980-3010
pubmed: 11028024
PLoS One. 2015 Oct 20;10(10):e0141263
pubmed: 26484763
Anal Chem. 2017 Nov 21;89(22):11999-12005
pubmed: 29027463
PLoS Comput Biol. 2013;9(9):e1003184
pubmed: 24068899
Appetite. 2013 Jan;60(1):1-4
pubmed: 23079143
Gigascience. 2018 Feb 1;7(2):
pubmed: 29267859
Eur J Med Chem. 2004 Dec;39(12):1039-46
pubmed: 15571865
Sci Rep. 2011;1:206
pubmed: 22355721
Database (Oxford). 2016 Oct 2;2016:
pubmed: 27694208
Org Biomol Chem. 2004 Nov 21;2(22):3250-5
pubmed: 15534702
Science. 2017 Feb 24;355(6327):820-826
pubmed: 28219971

Auteurs

Carmen C Licon (CC)

Lyon Neuroscience Research Center, University Lyon, CNRS UMR5292, France.
Food Science and Nutrition Department, California State University, Fresno, California, United States of America.

Guillaume Bosc (G)

INSA Lyon, CNRS, LIRIS UMR5205, France.
Infologic, Bourg-lès-Valence, France.

Mohammed Sabri (M)

Lyon Neuroscience Research Center, University Lyon, CNRS UMR5292, France.
Ecole Nationale Polytechnique d'Oran-Maurice Audin, Département de Mathématiques et Informatique, Oran, Algérie.

Marylou Mantel (M)

Lyon Neuroscience Research Center, University Lyon, CNRS UMR5292, France.

Arnaud Fournel (A)

Lyon Neuroscience Research Center, University Lyon, CNRS UMR5292, France.

Caroline Bushdid (C)

Institute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.

Jerome Golebiowski (J)

Institute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.
Department of Brain & Cognitive Sciences, DGIST, Daegu, Republic of Korea.

Celine Robardet (C)

INSA Lyon, CNRS, LIRIS UMR5205, France.

Marc Plantevit (M)

Université Lyon 1, CNRS, LIRIS UMR5205, France.

Mehdi Kaytoue (M)

INSA Lyon, CNRS, LIRIS UMR5205, France.
Infologic, Bourg-lès-Valence, France.

Moustafa Bensafi (M)

Lyon Neuroscience Research Center, University Lyon, CNRS UMR5292, France.

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