Predicting human disease mutations and identifying drug targets from mouse gene knockout phenotyping campaigns.


Journal

Disease models & mechanisms
ISSN: 1754-8411
Titre abrégé: Dis Model Mech
Pays: England
ID NLM: 101483332

Informations de publication

Date de publication:
07 05 2019
Historique:
entrez: 9 5 2019
pubmed: 9 5 2019
medline: 6 2 2020
Statut: epublish

Résumé

Two large-scale mouse gene knockout phenotyping campaigns have provided extensive data on the functions of thousands of mammalian genes. The ongoing International Mouse Phenotyping Consortium (IMPC), with the goal of examining all ∼20,000 mouse genes, has examined 5115 genes since 2011, and phenotypic data from several analyses are available on the IMPC website (www.mousephenotype.org). Mutant mice having at least one human genetic disease-associated phenotype are available for 185 IMPC genes. Lexicon Pharmaceuticals' Genome5000™ campaign performed similar analyses between 2000 and the end of 2008 focusing on the druggable genome, including enzymes, receptors, transporters, channels and secreted proteins. Mutants (4654 genes, with 3762 viable adult homozygous lines) with therapeutically interesting phenotypes were studied extensively. Importantly, phenotypes for 29 Lexicon mouse gene knockouts were published prior to observations of similar phenotypes resulting from homologous mutations in human genetic disorders. Knockout mouse phenotypes for an additional 30 genes mimicked previously published human genetic disorders. Several of these models have helped develop effective treatments for human diseases. For example, studying

Identifiants

pubmed: 31064765
pii: 12/5/dmm038224
doi: 10.1242/dmm.038224
pmc: PMC6550044
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2019. Published by The Company of Biologists Ltd.

Déclaration de conflit d'intérêts

Competing interestsD.R.P. is currently employed at Lexicon Pharmaceuticals and has stock shares and stock options. R.B. and P.V. were previously employed at Lexicon Pharmaceuticals. R.B. owns Lexicon stock shares. P.V. has no financial interests.

Références

PLoS Genet. 2014 Oct 23;10(10):e1004705
pubmed: 25340873
Handb Exp Pharmacol. 2007;(178):129-47
pubmed: 17203654
Neuromuscul Disord. 2009 Feb;19(2):147-50
pubmed: 19138848
Hum Mol Genet. 2002 Jul 15;11(15):1775-84
pubmed: 12095919
Arterioscler Thromb Vasc Biol. 2009 Jun;29(6):956-62
pubmed: 19304573
J Am Coll Cardiol. 2016 Feb 9;67(5):515-25
pubmed: 26846950
Am J Hum Genet. 2016 Oct 6;99(4):886-893
pubmed: 27616478
Blood. 2012 Apr 12;119(15):3450-7
pubmed: 22294732
Nature. 2012 Jul 25;487(7408):427-8
pubmed: 22836983
N Engl J Med. 2017 Dec 14;377(24):2337-2348
pubmed: 28899222
Science. 2006 Jun 30;312(5782):1862-6
pubmed: 16809501
Vet Pathol. 2010 Jul;47(4):703-12
pubmed: 20442420
PLoS One. 2017 Jul 10;12(7):e0180682
pubmed: 28700664
J Immunol. 2006 Feb 1;176(3):1899-907
pubmed: 16424221
Nat Commun. 2018 Jan 30;9(1):441
pubmed: 29382827
Vet Pathol. 2015 Jan;52(1):224-9
pubmed: 24686385
Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5374-9
pubmed: 15805190
J Bone Miner Res. 2019 Jun;34(6):1101-1114
pubmed: 30721528
J Proteome Res. 2015 May 1;14(5):2036-45
pubmed: 25849460
Gastroenterology. 2011 Aug;141(2):507-16
pubmed: 21684281
Nephron Physiol. 2012;122(1-2):1-6
pubmed: 23434854
Biomed Res Int. 2014;2014:123010
pubmed: 25045656
Hum Genet. 2013 Oct;132(10):1077-130
pubmed: 23820649
Arch Med Sci. 2017 Jun;13(4):914-929
pubmed: 28721159
Dev Biol. 2012 Mar 15;363(2):413-25
pubmed: 22280990
Genes Brain Behav. 2008 Jun;7(4):385-92
pubmed: 17973922
Physiol Genomics. 2001 Dec 21;7(2):179-86
pubmed: 11773604
BMC Res Notes. 2012 Oct 24;5:577
pubmed: 23095377
J Clin Invest. 2009 Jan;119(1):70-9
pubmed: 19075393
Am J Pathol. 2006 Apr;168(4):1288-98
pubmed: 16565502
Nat Genet. 2014 Apr;46(4):357-63
pubmed: 24584071
Nat Genet. 2002 May;31(1):21-3
pubmed: 11967537
Am J Hum Genet. 2001 Mar;68(3):577-89
pubmed: 11179006
J Endocrinol. 2016 Oct;231(1):R31-46
pubmed: 27535945
Nature. 2011 Feb 10;470(7333):163-5
pubmed: 21307913
Nat Genet. 2015 Sep;47(9):969-978
pubmed: 26214591
Am J Hum Genet. 2008 Jun;82(6):1290-305
pubmed: 18513683
Nat Genet. 2000 May;25(1):15-7
pubmed: 10802646
PLoS One. 2017 Nov 16;12(11):e0187926
pubmed: 29145497
Cell. 2013 Jul 18;154(2):452-64
pubmed: 23870131
PLoS Biol. 2018 Sep 18;16(9):e2006643
pubmed: 30226837
Vet Pathol. 2012 Jan;49(1):131-41
pubmed: 21441111
J Bone Miner Res. 2003 Oct;18(10):1740-7
pubmed: 14584882
Vet Pathol. 2008 Mar;45(2):264-79
pubmed: 18424845
Science. 2012 Jan 6;335(6064):89-92
pubmed: 22174130
Bone Res. 2014 Oct 28;2:14034
pubmed: 26273529
Glycobiology. 2013 Mar;23(3):363-80
pubmed: 23118208
N Engl J Med. 2017 Jul 20;377(3):211-221
pubmed: 28538136
Hum Mutat. 2017 Apr;38(4):365-372
pubmed: 28181337
Mol Endocrinol. 2014 Sep;28(9):1403-7
pubmed: 25184858
J Bone Miner Res. 2011 Dec;26(12):2823-6
pubmed: 21997141
J Med Genet. 2014 Apr;51(4):275-82
pubmed: 24556084
Bone Res. 2019 Jan 8;7:2
pubmed: 30622831
Sci Transl Med. 2017 Mar 29;9(383):
pubmed: 28356508
Invest Ophthalmol Vis Sci. 2004 Aug;45(8):2767-77
pubmed: 15277503
Nat Commun. 2015 Mar 04;6:6228
pubmed: 25736573
Am J Med Genet A. 2017 Feb;173(2):395-406
pubmed: 27759917
Nat Commun. 2016 Aug 18;7:12444
pubmed: 27534441
EMBO Mol Med. 2016 Mar 31;8(4):363-74
pubmed: 26902202
Nature. 1998 Apr 9;392(6676):608-11
pubmed: 9560157
Diabetes. 2005 Sep;54(9):2663-7
pubmed: 16123355
Genes Brain Behav. 2010 Aug;9(6):562-74
pubmed: 20398059
Cell. 2003 May 16;113(4):445-56
pubmed: 12757706
Am J Med Genet A. 2017 Mar;173(3):661-666
pubmed: 28052552
Am J Hum Genet. 2010 Dec 10;87(6):757-67
pubmed: 21129728
Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
pubmed: 14610273
Methods Mol Biol. 2019;1914:559-569
pubmed: 30729486
Am J Hum Genet. 2010 Dec 10;87(6):768-78
pubmed: 21129727
Am J Hum Genet. 2013 Apr 4;92(4):627-31
pubmed: 23561848
Nat Med. 2011 Jun;17(6):684-91
pubmed: 21602802
Mamm Genome. 2015 Apr;26(3-4):142-53
pubmed: 25645994
Am J Hum Genet. 2012 Mar 9;90(3):467-77
pubmed: 22341971
Endocrinology. 2015 Mar;156(3):1023-32
pubmed: 25521583
Dis Model Mech. 2014 May;7(5):515-24
pubmed: 24652767
Hum Mol Genet. 2001 Mar 1;10(5):537-43
pubmed: 11181578
Invest Ophthalmol Vis Sci. 2018 May 1;59(6):2252-2261
pubmed: 29847629
Nat Genet. 2017 Aug;49(8):1231-1238
pubmed: 28650483
Curr Osteoporos Rep. 2018 Apr;16(2):77-94
pubmed: 29508144
Hum Mol Genet. 2014 Nov 1;23(21):5781-92
pubmed: 24925318
Dis Model Mech. 2015 Nov;8(11):1341-3
pubmed: 26512121
J Hum Genet. 2017 Apr;62(5):575-576
pubmed: 28100910
Nat Rev Drug Discov. 2013 Aug;12(8):581-94
pubmed: 23868113
J Clin Invest. 2017 Mar 1;127(3):912-928
pubmed: 28165339
Endocrinology. 2016 Dec;157(12):4534-4541
pubmed: 27754787
Wellcome Open Res. 2016 Nov 15;1:1
pubmed: 27996060
Nat Rev Genet. 2018 Jun;19(6):357-370
pubmed: 29626206
Nat Rev Drug Discov. 2017 Jan;16(1):19-34
pubmed: 27910877
Science. 2001 Aug 10;293(5532):1107-12
pubmed: 11498583
Nat Genet. 1998 Oct;20(2):113-4
pubmed: 9771699
Am J Hum Genet. 2018 Oct 4;103(4):612-620
pubmed: 30269812
J Clin Invest. 2017 Mar 1;127(3):942-953
pubmed: 28165343
Hum Mol Genet. 2000 Sep 22;9(15):2329-34
pubmed: 11001937
Nature. 1991 Mar 28;350(6316):354-6
pubmed: 2008213
PLoS One. 2010 Oct 27;5(10):e13654
pubmed: 21048919
Bonekey Rep. 2015 Jul 15;4:718
pubmed: 26229596
Curr Protoc Mouse Biol. 2012 Jun 1;2:103-118
pubmed: 25364627
Commun Biol. 2018 Dec 21;1:236
pubmed: 30588515
Nat Genet. 2007 Jun;39(6):776-80
pubmed: 17486094
Genes Nutr. 2015 Sep;10(5):487
pubmed: 26319140
Evol Med Public Health. 2016 May 21;2016(1):170-6
pubmed: 27121451
Mol Cell Biol. 2001 Jul;21(14):4829-36
pubmed: 11416156
Am J Hum Genet. 2010 Feb 12;86(2):248-53
pubmed: 20159112
EBioMedicine. 2016 Apr;6:206-214
pubmed: 27211562
J Biol Chem. 2006 Aug 18;281(33):23698-711
pubmed: 16790443
Biotechniques. 1999 Jun;26(6):1150-6, 1158, 1160
pubmed: 10376154
J Clin Endocrinol Metab. 2018 May 1;103(5):1889-1898
pubmed: 29546359
Cell. 2009 Oct 16;139(2):299-311
pubmed: 19837033
Nat Genet. 2000 Nov;26(3):345-8
pubmed: 11062477
Neurosci Lett. 2008 Jun 20;438(2):205-9
pubmed: 18450376
Methods Enzymol. 2010;477:297-312
pubmed: 20699147
Eur Heart J. 2016 Sep 01;37(33):2586-90
pubmed: 27106955
J Clin Invest. 2000 Mar;105(5):673-81
pubmed: 10712439
Mamm Genome. 2010 Oct;21(9-10):467-76
pubmed: 20799038
N Engl J Med. 2011 Feb 24;364(8):740-8
pubmed: 21345103
FASEB J. 2015 Dec;29(12):5018-28
pubmed: 26324848
PLoS One. 2008;3(10):e3301
pubmed: 18923670
Cell. 2006 Oct 20;127(2):291-304
pubmed: 17055431
J Immunol. 2013 Oct 1;191(7):3789-98
pubmed: 23997217
Genet Med. 2017 Aug;19(8):875-882
pubmed: 28125082
Vet Pathol. 2016 Jul;53(4):853-62
pubmed: 26926082
PLoS One. 2012;7(9):e45500
pubmed: 23029056
Diabetes Care. 2015 Mar;38(3):431-8
pubmed: 25216510
Vet Pathol. 2009 May;46(3):491-504
pubmed: 19176496
Obesity (Silver Spring). 2011 May;19(5):1010-8
pubmed: 21127480
J Clin Endocrinol Metab. 2002 Mar;87(3):1423-6
pubmed: 11889220
ILAR J. 2017 Jul 1;58(1):17-41
pubmed: 28838066
Blood. 2011 May 5;117(18):4895-904
pubmed: 21346251
Ernst Schering Res Found Workshop. 2005;(50):27-44
pubmed: 15526935
Science. 2015 Jul 24;349(6246):390
pubmed: 26206923
Vet Pathol. 2013 Jan;50(1):65-75
pubmed: 22688586
Hum Mol Genet. 2018 Apr 1;27(7):1196-1211
pubmed: 29365104
FASEB J. 2019 Oct;33(10):11163-11179
pubmed: 31307226
PLoS Genet. 2012 Jul;8(7):e1002718
pubmed: 22792070
Am J Hum Genet. 2016 Oct 6;99(4):912-916
pubmed: 27616480
J Ocul Pharmacol Ther. 2009 Jun;25(3):187-94
pubmed: 19456252
Genome Res. 2015 Jul;25(7):948-57
pubmed: 25917818
N Engl J Med. 2018 Nov 29;379(22):2131-2139
pubmed: 30304647
Am J Hum Genet. 2010 Feb 12;86(2):240-7
pubmed: 20159111
J Biol Chem. 2009 May 15;284(20):13735-13745
pubmed: 19318355
Invest Ophthalmol Vis Sci. 2007 Nov;48(11):5221-8
pubmed: 17962477
PLoS One. 2009;4(1):e4112
pubmed: 19119317
Obesity (Silver Spring). 2008 Oct;16(10):2362-7
pubmed: 18719666
Vet Pathol. 2011 May;48(3):642-54
pubmed: 21051554
Nature. 2016 Sep 22;537(7621):508-514
pubmed: 27626380
J Bone Miner Res. 2007 Mar;22(3):394-402
pubmed: 17147489
Cell Metab. 2007 Apr;5(4):279-91
pubmed: 17403372
J Pharmacol Exp Ther. 2016 Sep;358(3):371-86
pubmed: 27411717
Cell. 2001 Nov 16;107(4):513-23
pubmed: 11719191
J Dent Res. 2015 Dec;94(12):1646-52
pubmed: 26416033
Diabetes Metab Syndr Obes. 2016 Jun 22;9:185-99
pubmed: 27382320
Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9
pubmed: 24194600
Mamm Genome. 2012 Oct;23(9-10):600-10
pubmed: 22961258
Hum Mutat. 2017 Aug;38(8):964-969
pubmed: 28543983
Nat Rev Drug Discov. 2018 May;17(5):377
pubmed: 29567993
J Bone Miner Res. 2012 Jul;27(7):1553-65
pubmed: 22437732
J Invest Dermatol. 2013 Jul;133(7):1834-40
pubmed: 23364476
PLoS One. 2016 Mar 10;11(3):e0150944
pubmed: 26964041
Am J Hum Genet. 2004 Jul;75(1):27-34
pubmed: 15146390
Am J Hum Genet. 2017 Aug 3;101(2):177-191
pubmed: 28777930
Dev Biol. 2016 Jul 15;415(2):216-227
pubmed: 26234751
Front Endocrinol (Lausanne). 2015 Jun 02;6:86
pubmed: 26082754
J Hum Genet. 2017 Mar;62(3):437-441
pubmed: 27829680
J Cell Sci. 2014 Feb 1;127(Pt 3):630-40
pubmed: 24284070
Genome Res. 2015 Apr;25(4):598-607
pubmed: 25591789
J Med Genet. 2006 Apr;43(4):378-81
pubmed: 16199541
Nat Biotechnol. 2010 Jul;28(7):749-55
pubmed: 20562862
Dis Model Mech. 2018 Oct 1;11(10):
pubmed: 30194139
PLoS Genet. 2012;8(8):e1002858
pubmed: 22876197
Schizophr Res. 2015 Aug;166(1-3):119-24
pubmed: 26091878
Mol Cell Biol. 2011 Jan;31(1):63-80
pubmed: 20974805
Am J Physiol Endocrinol Metab. 2013 Jan 15;304(2):E117-30
pubmed: 23149623
Nat Commun. 2018 Aug 6;9(1):3087
pubmed: 30082715
PLoS One. 2014 May 22;9(5):e98151
pubmed: 24852423
Endocrinology. 2011 Jul;152(7):2837-44
pubmed: 21586553
Nat Med. 2003 Apr;9(4):399-406
pubmed: 12627228
Nat Rev Drug Discov. 2003 Jan;2(1):38-51
pubmed: 12509758
PLoS One. 2014 Feb 11;9(2):e88889
pubmed: 24523945
J Bone Miner Res. 2013 Sep;28(9):1962-74
pubmed: 23526378
Hum Genet. 2016 Dec;135(12):1375-1387
pubmed: 27655171
Vet Pathol. 2010 Jan;47(1):120-31
pubmed: 20080492
J Immunol. 2010 Jul 1;185(1):327-34
pubmed: 20505138
Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2554-7
pubmed: 26957571
J Clin Invest. 2007 Sep;117(9):2684-91
pubmed: 17710231
Mamm Genome. 2012 Aug;23(7-8):416-30
pubmed: 22527485
Vet Pathol. 2011 Mar;48(2):486-94
pubmed: 20634410
Am J Hum Genet. 2012 Mar 9;90(3):457-66
pubmed: 22341972
Hum Genet. 2002 Dec;111(6):544-7
pubmed: 12436245
Cell. 2006 Dec 1;127(5):917-28
pubmed: 17129779
Cytogenet Genome Res. 2018;156(1):14-21
pubmed: 30086552
J Med Genet. 2016 Aug;53(8):568-74
pubmed: 27055475
Vet Pathol. 2015 May;52(3):580-95
pubmed: 25161209
Neuroscience. 2006 Jun 19;140(1):321-34
pubmed: 16542782
Nat Genet. 2015 Aug;47(8):856-60
pubmed: 26121088
PLoS One. 2009 Aug 12;4(8):e6612
pubmed: 19672313
Nat Genet. 2003 Aug;34(4):379-81
pubmed: 12881724
Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10
pubmed: 27357688
Nat Commun. 2017 Oct 12;8(1):886
pubmed: 29026089
Hum Mutat. 2016 Aug;37(8):727-31
pubmed: 27060491
PLoS Genet. 2010 Feb 05;6(2):e1000833
pubmed: 20140240
PLoS One. 2012;7(10):e47168
pubmed: 23071748
J Vis Exp. 2016 Sep 14;(115):
pubmed: 27684089
Nat Genet. 2002 Oct;32(2):326-30
pubmed: 12172548
Nat Rev Drug Discov. 2019 Apr;18(4):255-272
pubmed: 30679805
Nat Genet. 2017 Oct;49(10):1468-1475
pubmed: 28869591
PLoS One. 2010 Jun 22;5(6):e11261
pubmed: 20582322
Cell. 2013 Nov 7;155(4):765-77
pubmed: 24209692
Nat Commun. 2014 Apr 11;5:3540
pubmed: 24721909
Mamm Genome. 2012 Oct;23(9-10):580-6
pubmed: 22968824
J Med Chem. 2017 Jan 26;60(2):710-721
pubmed: 28045524
J Mol Model. 2009 Jun;15(6):695-9
pubmed: 18663489
N Engl J Med. 2016 Jun 30;374(26):2553-2562
pubmed: 27355534
J Clin Endocrinol Metab. 2008 Feb;93(2):605-10
pubmed: 18042646
J Bone Miner Res. 2017 Apr;32(4):757-769
pubmed: 27862258
PLoS Genet. 2012 Jul;8(7):e1002745
pubmed: 22792071
Invest Ophthalmol Vis Sci. 2011 Aug 16;52(9):6452-61
pubmed: 21743011
Pediatr Nephrol. 2005 Mar;20(3):432-40
pubmed: 15723268
Nat Commun. 2018 Jan 18;9(1):288
pubmed: 29348434
Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11766-71
pubmed: 17609370
Nat Genet. 1998 Oct;20(2):111-2
pubmed: 9771698
Cancer Res. 2002 Jun 1;62(11):3221-5
pubmed: 12036937
Vet Pathol. 2012 Nov;49(6):998-1017
pubmed: 22732358
Vet Pathol. 2012 Jan;49(1):166-81
pubmed: 21746835
Int J Oncol. 2013 Oct;43(4):1244-52
pubmed: 23921441
J Lipid Res. 2009 Dec;50(12):2421-9
pubmed: 19542565
Blood. 2012 Apr 12;119(15):3458-68
pubmed: 22174160
BMC Neurosci. 2010 Nov 05;11:143
pubmed: 21054826
J Clin Oncol. 2017 Jan;35(1):14-23
pubmed: 27918724
N Engl J Med. 2004 Jun 24;350(26):2682-8
pubmed: 15215484
Dis Model Mech. 2015 Nov;8(11):1467-78
pubmed: 26398943
Dis Model Mech. 2012 Jan;5(1):19-25
pubmed: 22028326
Nat Genet. 2019 Feb;51(2):258-266
pubmed: 30598549
Vet Pathol. 2011 May;48(3):663-75
pubmed: 20448277
Dis Model Mech. 2016 Feb;9(2):101-3
pubmed: 26839397
Hum Mol Genet. 2018 Sep 1;27(17):3029-3045
pubmed: 29878199
Diabetes. 2015 Nov;64(11):3818-28
pubmed: 26239056

Auteurs

Robert Brommage (R)

Department of Metabolism Research, Lexicon Pharmaceuticals, 8800 Technology Forest Place, The Woodlands, TX 77381, USA rbrommage@lexpharma.com.

David R Powell (DR)

Department of Metabolism Research, Lexicon Pharmaceuticals, 8800 Technology Forest Place, The Woodlands, TX 77381, USA.

Peter Vogel (P)

St. Jude Children's Research Hospital, Pathology, MS 250, Room C5036A, 262 Danny Thomas Place, Memphis, TN 38105, USA.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH