New Possibilities on the Horizon: Genome Editing Makes the Whole Genome Accessible for Changes.
CRISPR/Cas
DNA mismatch repair
base editing
genetic variation
genome editing
meiotic recombination
mutagenesis
mutations
Journal
Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200
Informations de publication
Date de publication:
2019
2019
Historique:
received:
10
01
2019
accepted:
04
04
2019
entrez:
10
5
2019
pubmed:
10
5
2019
medline:
10
5
2019
Statut:
epublish
Résumé
The emergence of new genome editing techniques, such as the site-directed nucleases, clustered regulatory interspaced short palindromic repeats (CRISPRs)/Cas9, transcription activator-like effector nucleases (TALENs), or zinc finger nucleases (ZFNs), has greatly increased the feasibility of introducing any desired changes into the genome of a target organism. The ability to target a Cas nuclease to DNA sequences with a single-guide RNA (sgRNA) has provided a dynamic tool for genome editing and is naturally derived from an adaptive immune system in bacteria and archaea. CRISPR/Cas systems are being rapidly improved and refined, thereby opening up even more possibilities. Classical plant breeding is based on genetic variations that occur naturally and is used to select plants with improved traits. Induced mutagenesis is used to enhance mutational frequency and accelerate this process. Plants have evolved cellular processes, including certain repair mechanisms that ensure DNA integrity and the maintenance of distinct DNA loci. The focus of this review is on the characterization of new potentials in plant breeding through the use of CRISPR/Cas systems that eliminate natural limitations in order to induce thus far unachievable genomic changes.
Identifiants
pubmed: 31068963
doi: 10.3389/fpls.2019.00525
pmc: PMC6491833
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
525Références
Trends Plant Sci. 1999 Jul;4(7):263-269
pubmed: 10407442
J Biol Chem. 1999 Sep 17;274(38):26668-82
pubmed: 10480869
Nucleic Acids Res. 2000 Jan 15;28(2):463-71
pubmed: 10606644
Genetics. 2000 Mar;154(3):1291-300
pubmed: 10757770
Plant Cell. 2000 Jun;12(6):991-1002
pubmed: 10852942
Plant Physiol. 2000 Jun;123(2):439-42
pubmed: 10859174
Nature. 2000 Aug 24;406(6798):910-3
pubmed: 10972295
Plant Physiol. 2001 Jun;126(2):480-4
pubmed: 11402178
Plant Physiol. 2003 Jan;131(1):139-46
pubmed: 12529522
Genetics. 2003 Jun;164(2):731-40
pubmed: 12807792
BMC Plant Biol. 2004 Jul 28;4:12
pubmed: 15282033
Genetics. 1992 Mar;130(3):451-60
pubmed: 1551570
Genes Dev. 2004 Nov 1;18(21):2676-85
pubmed: 15520284
J Mol Evol. 2005 Feb;60(2):174-82
pubmed: 15791728
Annu Rev Genet. 2005;39:121-52
pubmed: 16285855
Cancer Cell. 2006 Jun;9(6):417-8
pubmed: 16766259
Plant Biotechnol J. 2005 Jul;3(4):399-407
pubmed: 17173628
Science. 2007 Mar 23;315(5819):1709-12
pubmed: 17379808
BMC Plant Biol. 2007 Apr 11;7:19
pubmed: 17428339
Dev Cell. 2008 Sep;15(3):401-15
pubmed: 18691940
Science. 2010 Jan 1;327(5961):92-4
pubmed: 20044577
Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):17023-8
pubmed: 20829492
J Exp Bot. 2011 May;62(8):2925-37
pubmed: 21307385
Theor Appl Genet. 2011 Dec;123(8):1445-58
pubmed: 21870137
J Appl Genet. 2011 Nov;52(4):371-90
pubmed: 21912935
Genome Dyn Stab. 2008 Jan 1;2:81-123
pubmed: 21927624
Heredity (Edinb). 2012 Apr;108(4):447-55
pubmed: 22072068
PLoS Genet. 2011 Nov;7(11):e1002354
pubmed: 22072983
Genome Res. 2012 Mar;22(3):508-18
pubmed: 22106370
Plant Cell. 2011 Dec;23(12):4241-53
pubmed: 22180627
Nat Genet. 2012 Jan 08;44(2):212-6
pubmed: 22231484
Nat Rev Mol Cell Biol. 2012 Jan 23;13(2):115-26
pubmed: 22266761
Int J Plant Genomics. 2011;2011:314829
pubmed: 22315587
Theor Appl Genet. 2012 Sep;125(5):975-86
pubmed: 22688271
Science. 2012 Aug 17;337(6096):816-21
pubmed: 22745249
Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):E2774-83
pubmed: 22991466
Plant Signal Behav. 2012 Dec;7(12):1621-33
pubmed: 23072988
Nature. 2012 Nov 29;491(7426):711-6
pubmed: 23075845
Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20992-7
pubmed: 23213238
Science. 2013 Feb 15;339(6121):823-6
pubmed: 23287722
Elife. 2013 Jan 29;2:e00471
pubmed: 23386978
Cell. 2013 Feb 28;152(5):1173-83
pubmed: 23452860
Cold Spring Harb Perspect Biol. 2013 Apr 01;5(4):a012633
pubmed: 23545421
J Exp Bot. 2013 May;64(8):2139-54
pubmed: 23554258
Cell. 2013 Apr 25;153(3):590-600
pubmed: 23622243
Nat Biotechnol. 2013 Aug;31(8):686-8
pubmed: 23929338
Mol Plant. 2013 Nov;6(6):2008-11
pubmed: 23963532
Nat Genet. 2013 Nov;45(11):1327-36
pubmed: 24056716
Nat Methods. 2013 Nov;10(11):1116-21
pubmed: 24076762
Nat Protoc. 2013 Nov;8(11):2180-96
pubmed: 24136345
Theor Appl Genet. 1989 Mar;77(3):353-9
pubmed: 24232612
PLoS Genet. 2013 Nov;9(11):e1003922
pubmed: 24244190
Elife. 2013 Dec 17;2:e01426
pubmed: 24347547
Nature. 2014 Mar 6;507(7490):62-7
pubmed: 24476820
Cell. 2014 Feb 27;156(5):935-49
pubmed: 24529477
Nat Biotechnol. 2014 Apr;32(4):347-55
pubmed: 24584096
Cell. 2014 Jun 5;157(6):1262-78
pubmed: 24906146
Plant J. 2014 Sep;79(6):981-92
pubmed: 24947331
Nat Genet. 2014 Nov;46(11):1220-6
pubmed: 25305757
Science. 2014 Nov 28;346(6213):1258096
pubmed: 25430774
BMC Plant Biol. 2014 Nov 29;14:327
pubmed: 25432517
Annu Rev Plant Biol. 2015;66:297-327
pubmed: 25494464
New Phytol. 2015 Jun;206(4):1491-502
pubmed: 25664766
Nature. 2015 May 7;521(7550):81-4
pubmed: 25707793
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3570-5
pubmed: 25733849
Nature. 2015 Apr 9;520(7546):186-91
pubmed: 25830891
Mol Plant. 2015 Aug;8(8):1274-84
pubmed: 25917172
Nature. 2015 Jul 23;523(7561):481-5
pubmed: 26098369
Front Plant Sci. 2015 Jun 11;6:442
pubmed: 26124769
New Phytol. 2015 Oct;208(2):421-9
pubmed: 26255865
Plant Physiol. 2015 Oct;169(2):931-45
pubmed: 26269544
Plant Cell. 2015 Sep;27(9):2427-36
pubmed: 26381163
Cell. 2015 Oct 22;163(3):759-71
pubmed: 26422227
Annu Rev Genet. 2015;49:291-313
pubmed: 26436461
Genes Dev. 2015 Oct 15;29(20):2183-202
pubmed: 26494791
Nat Biotechnol. 2015 Dec;33(12):1293-1298
pubmed: 26524662
Front Plant Sci. 2015 Oct 23;6:885
pubmed: 26557130
Plant Cell Rep. 2016 Jul;35(7):1519-33
pubmed: 26661595
Genetics. 1989 Jul;122(3):519-34
pubmed: 2668114
Mol Ther. 2016 Mar;24(3):645-54
pubmed: 26782639
Chromosoma. 2016 Jun;125(2):301-8
pubmed: 26801812
Sci Rep. 2016 Apr 01;6:23890
pubmed: 27033976
Nature. 2016 Apr 20;533(7603):420-4
pubmed: 27096365
Cell. 2016 May 5;165(4):949-62
pubmed: 27114038
Annu Rev Biochem. 2016 Jun 2;85:227-64
pubmed: 27145843
Biol Open. 2016 Jun 15;5(6):866-74
pubmed: 27170255
Science. 2016 Aug 5;353(6299):aaf5573
pubmed: 27256883
J Biol Chem. 2016 Aug 19;291(34):17692-705
pubmed: 27382058
BMC Biotechnol. 2016 Aug 11;16(1):58
pubmed: 27515683
Plant Biotechnol J. 2017 Jun;15(6):713-717
pubmed: 27875019
Plant Physiol. 2017 Mar;173(3):1530-1542
pubmed: 28108697
Nat Commun. 2017 Feb 16;8:14406
pubmed: 28205546
Curr Genomics. 2016 Dec;17(6):499-508
pubmed: 28217006
Sci China Life Sci. 2017 May;60(5):506-515
pubmed: 28349304
Annu Rev Biophys. 2017 May 22;46:505-529
pubmed: 28375731
Plant Biotechnol J. 2018 Jan;16(1):176-185
pubmed: 28509421
Cell. 2017 Jun 1;169(6):1142-1155.e12
pubmed: 28528644
Nat Biotechnol. 2017 Aug;35(8):789-792
pubmed: 28581492
Nat Commun. 2017 Jun 06;8:15790
pubmed: 28585549
Nat Plants. 2017 Jun 19;3:17103
pubmed: 28628131
Plant Biotechnol J. 2018 Feb;16(2):415-427
pubmed: 28640983
Sci Rep. 2017 Jun 30;7(1):4402
pubmed: 28667273
Plant J. 2017 Nov;92(3):495-508
pubmed: 28779536
Plant Biotechnol J. 2018 Apr;16(4):902-910
pubmed: 28921815
Genome Biol. 2017 Sep 18;18(1):176
pubmed: 28923089
Nature. 2017 Oct 12;550(7675):280-284
pubmed: 28976959
Mol Cell. 2017 Oct 5;68(1):26-43
pubmed: 28985508
Science. 2017 Nov 24;358(6366):1019-1027
pubmed: 29070703
Nature. 2017 Nov 23;551(7681):464-471
pubmed: 29160308
Genome Res. 2018 Jan;28(1):66-74
pubmed: 29233924
Annu Rev Plant Biol. 2018 Apr 29;69:577-609
pubmed: 29489392
Nature. 2018 Apr 5;556(7699):57-63
pubmed: 29512652
Genome Res. 2018 Apr;28(4):532-546
pubmed: 29530928
J Biol Chem. 2018 May 18;293(20):7811-7823
pubmed: 29610279
Front Plant Sci. 2018 Apr 26;9:559
pubmed: 29755497
Mol Cell. 2018 Jun 7;70(5):801-813.e6
pubmed: 29804829
Genetics. 2018 Aug;209(4):1029-1042
pubmed: 29907647
Genetics. 2018 Aug;209(4):1043-1054
pubmed: 29907648
Annu Rev Phytopathol. 2018 Aug 25;56:479-512
pubmed: 29975607
Nat Biotechnol. 2018 Nov;36(10):977-982
pubmed: 30059493
Science. 2018 Sep 21;361(6408):1259-1262
pubmed: 30166441
Front Plant Sci. 2018 Sep 19;9:1339
pubmed: 30283471
CRISPR J. 2018 Feb 1;1(1):65-74
pubmed: 30627700
Cell. 1983 May;33(1):25-35
pubmed: 6380756
Mol Cell Biol. 1995 Apr;15(4):1968-73
pubmed: 7891691
Mol Cell Biol. 1994 Dec;14(12):8096-106
pubmed: 7969147
Proc Natl Acad Sci U S A. 1994 Jun 21;91(13):6064-8
pubmed: 8016116
Nature. 1993 Apr 22;362(6422):709-15
pubmed: 8469282
Cell. 1997 Feb 7;88(3):375-84
pubmed: 9039264
Genetics. 1998 Apr;148(4):1491-505
pubmed: 9560369