Association analyses identify 31 new risk loci for colorectal cancer susceptibility.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
14 05 2019
14 05 2019
Historique:
received:
31
10
2018
accepted:
29
03
2019
entrez:
16
5
2019
pubmed:
16
5
2019
medline:
2
7
2019
Statut:
epublish
Résumé
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
Identifiants
pubmed: 31089142
doi: 10.1038/s41467-019-09775-w
pii: 10.1038/s41467-019-09775-w
pmc: PMC6517433
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2154Subventions
Organisme : Cancer Research UK
ID : 12076
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : U01 CA167551
Pays : United States
Organisme : NIAAA NIH HHS
ID : K05 AA000145
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA122839
Pays : United States
Organisme : Cancer Research UK
ID : 18504
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 10119
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 16563
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 10124
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 25514
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 25355
Pays : United Kingdom
Organisme : Medical Research Council
ID : G0600329
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12023/3
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/N01104X/2
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : U01 CA188392
Pays : United States
Organisme : Medical Research Council
ID : MC_U127527198
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/K018647/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12023/20
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/N003284/1
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : U24 CA074794
Pays : United States
Organisme : Medical Research Council
ID : MC_U122861325
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : HHSN268201200008C
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA074794
Pays : United States
Organisme : NCI NIH HHS
ID : U19 CA148537
Pays : United States
Organisme : Medical Research Council
ID : G0401527
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 18927
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/M004007/1
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : R01 CA143237
Pays : United States
Organisme : Medical Research Council
ID : G0600237
Pays : United Kingdom
Organisme : NIAAA NIH HHS
ID : K02 AA018755
Pays : United States
Organisme : Cancer Research UK
ID : 27327
Pays : United Kingdom
Organisme : Medical Research Council
ID : G1000143
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 16561
Pays : United Kingdom
Organisme : Worldwide Cancer Research
ID : 12-1087
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_00007/10
Pays : United Kingdom
Organisme : NIAAA NIH HHS
ID : R01 AA012502
Pays : United States
Organisme : Cancer Research UK
ID : 10118
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 14136
Pays : United Kingdom
Organisme : NIH HHS
ID : S10 OD020069
Pays : United States
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_00007/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/P001106/1
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : HHSN268201200008I
Pays : United States
Organisme : Medical Research Council
ID : MC_PC_U127527198
Pays : United Kingdom
Organisme : Cancer Research UK
ID : 22804
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/K026992/1
Pays : United Kingdom
Organisme : NIAAA NIH HHS
ID : R37 AA012502
Pays : United States
Investigateurs
Brian E Henderson
(BE)
Christopher A Haiman
(CA)
Fredrick R Schumacher
(FR)
Ali Amin Al Olama
(AA)
Sara Benlloch
(S)
Sonja I Berndt
(SI)
David V Conti
(DV)
Fredrik Wiklund
(F)
Stephen Chanock
(S)
Susan Gapstur
(S)
Victoria L Stevens
(VL)
Catherine M Tangen
(CM)
Jyotsna Batra
(J)
Judith Clements
(J)
Henrik Gronberg
(H)
Johanna Schleutker
(J)
Demetrius Albanes
(D)
Alicja Wolk
(A)
Catharine West
(C)
Lorelei Mucci
(L)
Géraldine Cancel-Tassin
(G)
Stella Koutros
(S)
Karina Dalsgaard Sorensen
(KD)
Eli Marie Grindedal
(EM)
David E Neal
(DE)
Freddie C Hamdy
(FC)
Jenny L Donovan
(JL)
Ruth C Travis
(RC)
Robert J Hamilton
(RJ)
Sue Ann Ingles
(SA)
Barry S Rosenstein
(BS)
Yong-Jie Lu
(YJ)
Graham G Giles
(GG)
Adam S Kibel
(AS)
Ana Vega
(A)
Manolis Kogevinas
(M)
Kathryn L Penney
(KL)
Jong Y Park
(JY)
Janet L Stanford
(JL)
Cezary Cybulski
(C)
Børge G Nordestgaard
(BG)
Christiane Maier
(C)
Jeri Kim
(J)
Esther M John
(EM)
Manuel R Teixeira
(MR)
Susan L Neuhausen
(SL)
Kim De Ruyck
(K)
Azad Razack
(A)
Lisa F Newcomb
(LF)
Marija Gamulin
(M)
Radka Kaneva
(R)
Nawaid Usmani
(N)
Frank Claessens
(F)
Paul A Townsend
(PA)
Manuela Gago-Dominguez
(M)
Monique J Roobol
(MJ)
Florence Menegaux
(F)
Kay-Tee Khaw
(KT)
Lisa Cannon-Albright
(L)
Hardev Pandha
(H)
Stephen N Thibodeau
(SN)
Références
Nat Genet. 2016 May;48(5):481-7
pubmed: 27019110
PLoS One. 2014 Jun 30;9(6):e101178
pubmed: 24978480
Int J Epidemiol. 2006 Feb;35(1):34-41
pubmed: 16155052
Gene. 2004 Oct 27;341:19-39
pubmed: 15474285
Nat Genet. 2008 Dec;40(12):1426-35
pubmed: 19011631
Nat Genet. 2018 Sep;50(9):1318-1326
pubmed: 30104760
Br J Cancer. 2010 Jan 19;102(2):447-54
pubmed: 19920828
FEBS Lett. 2007 Jul 10;581(17):3289-96
pubmed: 17599839
Genome Biol. 2016 Jun 15;17(1):127
pubmed: 27306882
Int J Epidemiol. 2013 Jun;42(3):689-700
pubmed: 22786799
Oncotarget. 2017 Oct 9;8(58):98623-98634
pubmed: 29228715
Cell. 2000 Oct 13;103(2):311-20
pubmed: 11057903
PLoS One. 2014 Sep 10;9(9):e107497
pubmed: 25208325
Nat Genet. 2015 Nov;47(11):1236-41
pubmed: 26414676
Am Heart J. 2002 Aug;144(2):212-8
pubmed: 12177636
Gut. 2001 Apr;48(4):526-35
pubmed: 11247898
Ann Oncol. 2016 Mar;27(3):429-34
pubmed: 26578737
PLoS One. 2010 Nov 15;5(11):e13984
pubmed: 21085593
Nat Commun. 2015 Jul 07;6:7138
pubmed: 26151821
Gastroenterology. 2016 Jun;150(7):1633-1645
pubmed: 26965516
Int J Epidemiol. 2012 Dec;41(6):1576-84
pubmed: 22253310
Curr Protoc Hum Genet. 2018 Jul 6;:e63
pubmed: 29979818
Cell. 2013 Aug 15;154(4):801-13
pubmed: 23953112
PLoS Genet. 2009 Jun;5(6):e1000529
pubmed: 19543373
Nat Commun. 2015 Feb 19;6:6178
pubmed: 25695508
Nat Genet. 2007 May;39(5):645-9
pubmed: 17401363
Bioinformatics. 2015 Dec 1;31(23):3847-9
pubmed: 26272984
Nat Protoc. 2010 Sep;5(9):1564-73
pubmed: 21085122
BMC Med. 2018 Aug 14;16(1):142
pubmed: 30103784
Hum Mol Genet. 2016 Jun 1;25(11):2349-2359
pubmed: 27005424
Nat Genet. 2013 Feb;45(2):124-30
pubmed: 23263488
Br J Cancer. 2007 Nov 5;97(9):1305-9
pubmed: 17895893
Hum Mol Genet. 2014 Sep 1;23(17):4729-37
pubmed: 24737748
Nature. 2015 Feb 19;518(7539):317-30
pubmed: 25693563
Nat Genet. 2007 Jul;39(7):870-4
pubmed: 17529973
Am J Hum Genet. 2011 Jan 7;88(1):76-82
pubmed: 21167468
EMBO J. 2012 Jun 12;31(14):3079-91
pubmed: 22692129
Clin Gastroenterol Hepatol. 2017 Aug;15(8):1256-1264
pubmed: 28130150
Cell Rep. 2014 Aug 21;8(4):983-90
pubmed: 25131200
Am J Gastroenterol. 2001 Oct;96(10):2992-3003
pubmed: 11693338
N Engl J Med. 2008 Jun 26;358(26):2796-803
pubmed: 18579814
Clin Epidemiol. 2018 Jan 19;10:143-152
pubmed: 29403313
Carcinogenesis. 2018 May 3;39(5):652-660
pubmed: 29471430
Nat Commun. 2015 Jan 19;6:5890
pubmed: 25597830
Cancer Epidemiol Biomarkers Prev. 2008 Jan;17(1):171-82
pubmed: 18199722
Nat Genet. 2012 Nov;44(11):1191-8
pubmed: 23001124
Nat Genet. 2019 Jan;51(1):76-87
pubmed: 30510241
PLoS One. 2013 Jun 06;8(6):e64683
pubmed: 23762245
Hum Genet. 2012 Feb;131(2):217-34
pubmed: 21761138
Nat Commun. 2017 Feb 07;8:14400
pubmed: 28169291
Nat Genet. 2017 Jul;49(7):986-992
pubmed: 28530675
Cancer Sci. 2013 Jan;104(1):9-14
pubmed: 23066889
Nature. 2018 Oct;562(7726):203-209
pubmed: 30305743
Nat Genet. 2012 Dec;44(12):1330-5
pubmed: 23143601
Am J Hum Genet. 2007 Aug;81(2):208-27
pubmed: 17668372
Nat Genet. 2009 Aug;41(8):885-90
pubmed: 19561604
Am J Hum Genet. 2007 Sep;81(3):559-75
pubmed: 17701901
Carcinogenesis. 2014 Nov;35(11):2512-9
pubmed: 25023989
PLoS One. 2014 Apr 14;9(4):e94863
pubmed: 24733310
Nat Genet. 2010 Nov;42(11):973-7
pubmed: 20972440
Nat Genet. 2018 Jul;50(7):928-936
pubmed: 29892016
Nat Genet. 2010 May;42(5):436-40
pubmed: 20418889
J Natl Cancer Inst. 2019 Feb 1;111(2):146-157
pubmed: 29917119
Nat Rev Cancer. 2017 Nov;17(11):692-704
pubmed: 29026206
Nat Genet. 2007 Jul;39(7):906-13
pubmed: 17572673
Bioinformatics. 2016 Sep 1;32(17):2598-603
pubmed: 27187203
PLoS Genet. 2011 Jun;7(6):e1002105
pubmed: 21655089
Nat Methods. 2011 Dec 04;9(2):179-81
pubmed: 22138821
Sci Rep. 2015 May 20;5:10442
pubmed: 25990418
Nat Commun. 2015 Oct 01;6:8559
pubmed: 26424050